(6 nodes) Mixed, incl. Cellular response to dsRNA, and WW domain binding network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-pqn-37	CRE-PQN-37 protein. (585 aa)
	CRE_14072	Uncharacterized protein. (181 aa)
	Cre-pqbp-1.2	CRE-PQBP-1.2 protein. (281 aa)
	CRE_21597	Uncharacterized protein. (243 aa)
	CRE_26876	Uncharacterized protein. (129 aa)
	CRE_10744	Uncharacterized protein. (222 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

Send network to Cytoscape

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_10744	CRE_26876	E3NR12	E3NQ90	Uncharacterized protein.	Uncharacterized protein.	0.622
CRE_10744	Cre-pqbp-1.2	E3NR12	E3N5Y1	Uncharacterized protein.	CRE-PQBP-1.2 protein.	0.622
CRE_10744	Cre-pqn-37	E3NR12	E3LCH4	Uncharacterized protein.	CRE-PQN-37 protein.	0.622
CRE_14072	CRE_26876	E3MRD2	E3NQ90	Uncharacterized protein.	Uncharacterized protein.	0.622
CRE_14072	Cre-pqbp-1.2	E3MRD2	E3N5Y1	Uncharacterized protein.	CRE-PQBP-1.2 protein.	0.622
CRE_14072	Cre-pqn-37	E3MRD2	E3LCH4	Uncharacterized protein.	CRE-PQN-37 protein.	0.622
CRE_21597	CRE_26876	E3NLP2	E3NQ90	Uncharacterized protein.	Uncharacterized protein.	0.878
CRE_21597	Cre-pqbp-1.2	E3NLP2	E3N5Y1	Uncharacterized protein.	CRE-PQBP-1.2 protein.	0.938
CRE_21597	Cre-pqn-37	E3NLP2	E3LCH4	Uncharacterized protein.	CRE-PQN-37 protein.	0.878
CRE_26876	CRE_10744	E3NQ90	E3NR12	Uncharacterized protein.	Uncharacterized protein.	0.622
CRE_26876	CRE_14072	E3NQ90	E3MRD2	Uncharacterized protein.	Uncharacterized protein.	0.622
CRE_26876	CRE_21597	E3NQ90	E3NLP2	Uncharacterized protein.	Uncharacterized protein.	0.878
Cre-pqbp-1.2	CRE_10744	E3N5Y1	E3NR12	CRE-PQBP-1.2 protein.	Uncharacterized protein.	0.622
Cre-pqbp-1.2	CRE_14072	E3N5Y1	E3MRD2	CRE-PQBP-1.2 protein.	Uncharacterized protein.	0.622
Cre-pqbp-1.2	CRE_21597	E3N5Y1	E3NLP2	CRE-PQBP-1.2 protein.	Uncharacterized protein.	0.938
Cre-pqn-37	CRE_10744	E3LCH4	E3NR12	CRE-PQN-37 protein.	Uncharacterized protein.	0.622
Cre-pqn-37	CRE_14072	E3LCH4	E3MRD2	CRE-PQN-37 protein.	Uncharacterized protein.	0.622
Cre-pqn-37	CRE_21597	E3LCH4	E3NLP2	CRE-PQN-37 protein.	Uncharacterized protein.	0.878