(7 nodes) Mixed, incl. Axon choice point recognition, and UPA domain network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-unc-6	CRE-UNC-6 protein. (612 aa)
	Cre-sax-3	CRE-SAX-3 protein. (697 aa)
	Cre-unc-40	CRE-UNC-40 protein. (1432 aa)
	Cre-madd-2	CRE-MADD-2 protein. (748 aa)
	CRE_15303	Uncharacterized protein. (574 aa)
	Cre-eva-1	CRE-EVA-1 protein. (473 aa)
	CRE_30335	Death domain-containing protein. (373 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_15303	CRE_30335	E3MC36	E3NUY5	Uncharacterized protein.	Death domain-containing protein.	0.751
CRE_15303	Cre-eva-1	E3MC36	E3MFD3	Uncharacterized protein.	CRE-EVA-1 protein.	0.849
CRE_15303	Cre-madd-2	E3MC36	E3MBM3	Uncharacterized protein.	CRE-MADD-2 protein.	0.677
CRE_15303	Cre-sax-3	E3MC36	E3LEY0	Uncharacterized protein.	CRE-SAX-3 protein.	0.998
CRE_15303	Cre-unc-40	E3MC36	E3LXC8	Uncharacterized protein.	CRE-UNC-40 protein.	0.913
CRE_15303	Cre-unc-6	E3MC36	E3LD86	Uncharacterized protein.	CRE-UNC-6 protein.	0.915
CRE_30335	CRE_15303	E3NUY5	E3MC36	Death domain-containing protein.	Uncharacterized protein.	0.751
CRE_30335	Cre-eva-1	E3NUY5	E3MFD3	Death domain-containing protein.	CRE-EVA-1 protein.	0.798
CRE_30335	Cre-madd-2	E3NUY5	E3MBM3	Death domain-containing protein.	CRE-MADD-2 protein.	0.559
CRE_30335	Cre-sax-3	E3NUY5	E3LEY0	Death domain-containing protein.	CRE-SAX-3 protein.	0.409
CRE_30335	Cre-unc-40	E3NUY5	E3LXC8	Death domain-containing protein.	CRE-UNC-40 protein.	0.981
CRE_30335	Cre-unc-6	E3NUY5	E3LD86	Death domain-containing protein.	CRE-UNC-6 protein.	0.978
Cre-eva-1	CRE_15303	E3MFD3	E3MC36	CRE-EVA-1 protein.	Uncharacterized protein.	0.849
Cre-eva-1	CRE_30335	E3MFD3	E3NUY5	CRE-EVA-1 protein.	Death domain-containing protein.	0.798
Cre-eva-1	Cre-madd-2	E3MFD3	E3MBM3	CRE-EVA-1 protein.	CRE-MADD-2 protein.	0.637
Cre-eva-1	Cre-sax-3	E3MFD3	E3LEY0	CRE-EVA-1 protein.	CRE-SAX-3 protein.	0.850
Cre-eva-1	Cre-unc-40	E3MFD3	E3LXC8	CRE-EVA-1 protein.	CRE-UNC-40 protein.	0.668
Cre-eva-1	Cre-unc-6	E3MFD3	E3LD86	CRE-EVA-1 protein.	CRE-UNC-6 protein.	0.534
Cre-madd-2	CRE_15303	E3MBM3	E3MC36	CRE-MADD-2 protein.	Uncharacterized protein.	0.677
Cre-madd-2	CRE_30335	E3MBM3	E3NUY5	CRE-MADD-2 protein.	Death domain-containing protein.	0.559