(54 nodes) c4 zinc finger in nuclear hormone receptors, and ETS family network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-nhr-137	CRE-NHR-137 protein. (373 aa)
	CRE_00829	ETS domain-containing protein. (307 aa)
	Cre-nhr-156	CRE-NHR-156 protein. (209 aa)
	CRE_08750	Uncharacterized protein. (360 aa)
	Cre-nhr-192	CRE-NHR-192 protein. (406 aa)
	Cre-nhr-53	CRE-NHR-53 protein. (367 aa)
	CRE_09111	Uncharacterized protein. (330 aa)
	CRE_09124	Uncharacterized protein. (358 aa)
	Cre-nhr-238	CRE-NHR-238 protein. (334 aa)
	CRE_18739	Uncharacterized protein. (368 aa)
	Cre-nhr-270	CRE-NHR-270 protein. (374 aa)
	Cre-npax-1	CRE-NPAX-1 protein. (117 aa)
	Cre-unc-39	CRE-UNC-39 protein. (374 aa)
	CRE_30662	Homeobox domain-containing protein. (207 aa)
	Cre-sptf-1	CRE-SPTF-1 protein. (235 aa)
	CRE_05781	ETS domain-containing protein. (207 aa)
	CRE_11958	Nuclear receptor domain-containing protein. (316 aa)
	Cre-npax-3	CRE-NPAX-3 protein. (218 aa)
	CRE_14543	BHLH domain-containing protein. (179 aa)
	CRE_15990	Uncharacterized protein. (342 aa)
	CRE_15995	Uncharacterized protein. (313 aa)
	Cre-sox-3	CRE-SOX-3 protein. (212 aa)
	Cre-ceh-43	CRE-CEH-43 protein. (301 aa)
	CRE_21253	Uncharacterized protein. (380 aa)
	CRE_09481	Uncharacterized protein. (335 aa)
	CRE_25660	ETS domain-containing protein. (399 aa)
	CRE_31314	Nuclear receptor domain-containing protein. (264 aa)
	CRE_05844	Uncharacterized protein. (338 aa)
	CRE_06819	Uncharacterized protein. (332 aa)
	CRE_06820	Nuclear receptor domain-containing protein. (302 aa)
	CRE_17308	Nuclear receptor domain-containing protein. (255 aa)
	CRE_17311	Uncharacterized protein. (365 aa)
	CRE_17354	Uncharacterized protein. (372 aa)
	CRE_17355	Uncharacterized protein. (381 aa)
	Cre-ast-1	CRE-AST-1 protein. (381 aa)
	CRE_26759	ETS domain-containing protein. (136 aa)
	CRE_03332	Paired domain-containing protein. (215 aa)
	CRE_03352	Paired domain-containing protein. (226 aa)
	CRE_12950	Uncharacterized protein. (381 aa)
	CRE_13011	Uncharacterized protein. (408 aa)
	CRE_23677	Homeobox domain-containing protein. (311 aa)
	Cre-nhr-92	CRE-NHR-92 protein. (353 aa)
	CRE_13720	Nuclear receptor domain-containing protein. (245 aa)
	CRE_20002	Uncharacterized protein. (360 aa)
	CRE_24203	Nuclear receptor domain-containing protein. (327 aa)
	CRE_07013	Uncharacterized protein. (466 aa)
	CRE_08562	Uncharacterized protein. (504 aa)
	CRE_07034	Uncharacterized protein. (419 aa)
	Cre-nhr-100	CRE-NHR-100 protein. (440 aa)
	Cre-egl-38	CRE-EGL-38 protein. (293 aa)
	Cre-lin-1	CRE-LIN-1 protein. (481 aa)
	CRE_05352	Uncharacterized protein. (470 aa)
	CRE_02779	Nuclear receptor domain-containing protein. (448 aa)
	CRE_24369	Nuclear receptor domain-containing protein. (249 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00829	CRE_03332	E3LEK3	E3MYM7	ETS domain-containing protein.	Paired domain-containing protein.	0.707
CRE_00829	CRE_03352	E3LEK3	E3MYN3	ETS domain-containing protein.	Paired domain-containing protein.	0.714
CRE_00829	CRE_05781	E3LEK3	E3M013	ETS domain-containing protein.	ETS domain-containing protein.	0.686
CRE_00829	CRE_05844	E3LEK3	E3MNN6	ETS domain-containing protein.	Uncharacterized protein.	0.400
CRE_00829	CRE_06819	E3LEK3	E3MP01	ETS domain-containing protein.	Uncharacterized protein.	0.439
CRE_00829	CRE_08750	E3LEK3	E3LHB7	ETS domain-containing protein.	Uncharacterized protein.	0.475
CRE_00829	CRE_09111	E3LEK3	E3LJB6	ETS domain-containing protein.	Uncharacterized protein.	0.505
CRE_00829	CRE_09124	E3LEK3	E3LJG1	ETS domain-containing protein.	Uncharacterized protein.	0.542
CRE_00829	CRE_12950	E3LEK3	E3N179	ETS domain-containing protein.	Uncharacterized protein.	0.441
CRE_00829	CRE_13011	E3LEK3	E3N180	ETS domain-containing protein.	Uncharacterized protein.	0.473
CRE_00829	CRE_13720	E3LEK3	E3NBR4	ETS domain-containing protein.	Nuclear receptor domain-containing protein.	0.431
CRE_00829	CRE_14543	E3LEK3	E3M9G5	ETS domain-containing protein.	BHLH domain-containing protein.	0.427
CRE_00829	CRE_17308	E3LEK3	E3MS20	ETS domain-containing protein.	Nuclear receptor domain-containing protein.	0.506
CRE_00829	CRE_17311	E3LEK3	E3MS25	ETS domain-containing protein.	Uncharacterized protein.	0.553
CRE_00829	CRE_17354	E3LEK3	E3MS26	ETS domain-containing protein.	Uncharacterized protein.	0.533
CRE_00829	CRE_17355	E3LEK3	E3MS27	ETS domain-containing protein.	Uncharacterized protein.	0.524
CRE_00829	CRE_18739	E3LEK3	E3LJQ8	ETS domain-containing protein.	Uncharacterized protein.	0.487
CRE_00829	CRE_20002	E3LEK3	E3NCF6	ETS domain-containing protein.	Uncharacterized protein.	0.429
CRE_00829	CRE_21253	E3LEK3	E3MF45	ETS domain-containing protein.	Uncharacterized protein.	0.488
CRE_00829	CRE_24369	E3LEK3	E3NVS8	ETS domain-containing protein.	Nuclear receptor domain-containing protein.	0.414