(23 nodes) Mixed, incl. ETS family, and PAX family network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_00829	ETS domain-containing protein. (307 aa)
	Cre-nhr-156	CRE-NHR-156 protein. (209 aa)
	CRE_08750	Uncharacterized protein. (360 aa)
	CRE_09111	Uncharacterized protein. (330 aa)
	Cre-nhr-238	CRE-NHR-238 protein. (334 aa)
	Cre-unc-39	CRE-UNC-39 protein. (374 aa)
	CRE_30662	Homeobox domain-containing protein. (207 aa)
	CRE_05781	ETS domain-containing protein. (207 aa)
	CRE_14543	BHLH domain-containing protein. (179 aa)
	CRE_21253	Uncharacterized protein. (380 aa)
	CRE_25660	ETS domain-containing protein. (399 aa)
	CRE_06820	Nuclear receptor domain-containing protein. (302 aa)
	CRE_17311	Uncharacterized protein. (365 aa)
	CRE_26759	ETS domain-containing protein. (136 aa)
	CRE_03332	Paired domain-containing protein. (215 aa)
	CRE_03352	Paired domain-containing protein. (226 aa)
	CRE_12950	Uncharacterized protein. (381 aa)
	CRE_13720	Nuclear receptor domain-containing protein. (245 aa)
	Cre-egl-38	CRE-EGL-38 protein. (293 aa)
	Cre-lin-1	CRE-LIN-1 protein. (481 aa)
	CRE_05352	Uncharacterized protein. (470 aa)
	CRE_02779	Nuclear receptor domain-containing protein. (448 aa)
	CRE_24369	Nuclear receptor domain-containing protein. (249 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00829	CRE_03332	E3LEK3	E3MYM7	ETS domain-containing protein.	Paired domain-containing protein.	0.707
CRE_00829	CRE_03352	E3LEK3	E3MYN3	ETS domain-containing protein.	Paired domain-containing protein.	0.714
CRE_00829	CRE_05781	E3LEK3	E3M013	ETS domain-containing protein.	ETS domain-containing protein.	0.686
CRE_00829	CRE_08750	E3LEK3	E3LHB7	ETS domain-containing protein.	Uncharacterized protein.	0.475
CRE_00829	CRE_09111	E3LEK3	E3LJB6	ETS domain-containing protein.	Uncharacterized protein.	0.505
CRE_00829	CRE_12950	E3LEK3	E3N179	ETS domain-containing protein.	Uncharacterized protein.	0.441
CRE_00829	CRE_13720	E3LEK3	E3NBR4	ETS domain-containing protein.	Nuclear receptor domain-containing protein.	0.431
CRE_00829	CRE_14543	E3LEK3	E3M9G5	ETS domain-containing protein.	BHLH domain-containing protein.	0.427
CRE_00829	CRE_17311	E3LEK3	E3MS25	ETS domain-containing protein.	Uncharacterized protein.	0.553
CRE_00829	CRE_21253	E3LEK3	E3MF45	ETS domain-containing protein.	Uncharacterized protein.	0.488
CRE_00829	CRE_24369	E3LEK3	E3NVS8	ETS domain-containing protein.	Nuclear receptor domain-containing protein.	0.414
CRE_00829	CRE_25660	E3LEK3	E3MLA1	ETS domain-containing protein.	ETS domain-containing protein.	0.826
CRE_00829	CRE_26759	E3LEK3	E3MXW7	ETS domain-containing protein.	ETS domain-containing protein.	0.666
CRE_00829	Cre-egl-38	E3LEK3	E3NLY0	ETS domain-containing protein.	CRE-EGL-38 protein.	0.966
CRE_00829	Cre-lin-1	E3LEK3	E3NNI5	ETS domain-containing protein.	CRE-LIN-1 protein.	0.565
CRE_00829	Cre-nhr-156	E3LEK3	E3LH97	ETS domain-containing protein.	CRE-NHR-156 protein.	0.491
CRE_00829	Cre-nhr-238	E3LEK3	E3LJK4	ETS domain-containing protein.	CRE-NHR-238 protein.	0.548
CRE_02779	CRE_03332	E3NUD0	E3MYM7	Nuclear receptor domain-containing protein.	Paired domain-containing protein.	0.449
CRE_02779	CRE_03352	E3NUD0	E3MYN3	Nuclear receptor domain-containing protein.	Paired domain-containing protein.	0.433
CRE_02779	CRE_05781	E3NUD0	E3M013	Nuclear receptor domain-containing protein.	ETS domain-containing protein.	0.527