(28 nodes) Mixed, incl. Deactivation of the beta-catenin transactivating complex, and Armadillo repeat domain binding network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-sox-2	CRE-SOX-2 protein. (282 aa)
	Cre-ceh-18	POU domain protein. (544 aa)
	Cre-sox-4	CRE-SOX-4 protein. (246 aa)
	CRE_28162	HMG box domain-containing protein. (346 aa)
	Cre-sem-2	CRE-SEM-2 protein. (407 aa)
	Cre-sptf-3	CRE-SPTF-3 protein. (385 aa)
	Cre-egl-27	CRE-EGL-27 protein. (897 aa)
	Cre-tab-1	CRE-TAB-1 protein. (229 aa)
	Cre-ceh-6	POU domain protein. (375 aa)
	Cre-nhr-67	CRE-NHR-67 protein. (422 aa)
	CRE_14512	Uncharacterized protein. (311 aa)
	CRE_14575	Uncharacterized protein. (429 aa)
	CRE_22475	Uncharacterized protein. (733 aa)
	Cre-fkh-7	CRE-FKH-7 protein. (929 aa)
	CRE_14814	Uncharacterized protein. (322 aa)
	CRE_21354	F-box domain-containing protein. (448 aa)
	CRE_20812	Uncharacterized protein. (465 aa)
	Cre-nhr-25	CRE-NHR-25 protein. (568 aa)
	Cre-egl-43	CRE-EGL-43 protein. (577 aa)
	CRE_14849	HMG box domain-containing protein. (271 aa)
	CRE_19937	Uncharacterized protein. (338 aa)
	Cre-sem-4	CRE-SEM-4 protein. (747 aa)
	Cre-pax-3	CRE-PAX-3 protein. (333 aa)
	CRE_07042	Nuclear receptor domain-containing protein. (325 aa)
	CRE_15801	Uncharacterized protein. (670 aa)
	CRE_02753	HMG box domain-containing protein. (262 aa)
	CRE_21088	Uncharacterized protein. (298 aa)
	CRE_17789	Uncharacterized protein. (246 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_02753	CRE_19937	E3NRP9	E3N8D9	HMG box domain-containing protein.	Uncharacterized protein.	0.751
CRE_02753	CRE_21088	E3NRP9	E3NTA4	HMG box domain-containing protein.	Uncharacterized protein.	0.472
CRE_02753	CRE_21354	E3NRP9	E3MUW7	HMG box domain-containing protein.	F-box domain-containing protein.	0.472
CRE_02753	CRE_28162	E3NRP9	E3LMM9	HMG box domain-containing protein.	HMG box domain-containing protein.	0.723
CRE_02753	Cre-sem-2	E3NRP9	E3LMN0	HMG box domain-containing protein.	CRE-SEM-2 protein.	0.725
CRE_02753	Cre-sox-2	E3NRP9	E3LCV8	HMG box domain-containing protein.	CRE-SOX-2 protein.	0.709
CRE_02753	Cre-sox-4	E3NRP9	E3LEX5	HMG box domain-containing protein.	CRE-SOX-4 protein.	0.713
CRE_07042	CRE_14575	E3NGW4	E3M9L6	Nuclear receptor domain-containing protein.	Uncharacterized protein.	0.650
CRE_07042	CRE_20812	E3NGW4	E3MUY2	Nuclear receptor domain-containing protein.	Uncharacterized protein.	0.568
CRE_07042	CRE_22475	E3NGW4	E3MDV4	Nuclear receptor domain-containing protein.	Uncharacterized protein.	0.601
CRE_07042	Cre-ceh-18	E3NGW4	E3LER0	Nuclear receptor domain-containing protein.	POU domain protein.	0.517
CRE_07042	Cre-ceh-6	E3NGW4	E3LV78	Nuclear receptor domain-containing protein.	POU domain protein.	0.509
CRE_07042	Cre-nhr-25	E3NGW4	E3MVJ2	Nuclear receptor domain-containing protein.	CRE-NHR-25 protein.	0.568
CRE_14512	CRE_17789	E3M9A5	E3NVP9	Uncharacterized protein.	Uncharacterized protein.	0.563
CRE_14512	Cre-ceh-18	E3M9A5	E3LER0	Uncharacterized protein.	POU domain protein.	0.854
CRE_14512	Cre-ceh-6	E3M9A5	E3LV78	Uncharacterized protein.	POU domain protein.	0.854
CRE_14512	Cre-egl-27	E3M9A5	E3LQT8	Uncharacterized protein.	CRE-EGL-27 protein.	0.531
CRE_14512	Cre-fkh-7	E3M9A5	E3MQZ8	Uncharacterized protein.	CRE-FKH-7 protein.	0.563
CRE_14512	Cre-sptf-3	E3M9A5	E3LN59	Uncharacterized protein.	CRE-SPTF-3 protein.	0.404
CRE_14512	Cre-tab-1	E3M9A5	E3LQU1	Uncharacterized protein.	CRE-TAB-1 protein.	0.886