25 items (Caenorhabditis remanei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-ceh-60	CRE-CEH-60 protein. (389 aa)
	CRE_00376	Homeobox domain-containing protein. (158 aa)
	CRE_01802	Homeobox domain-containing protein. (285 aa)
	Cre-unc-62	CRE-UNC-62 protein. (565 aa)
	Cre-eya-1	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (493 aa)
	Cre-ceh-33	CRE-CEH-33 protein. (597 aa)
	Cre-ceh-32	CRE-CEH-32 protein. (440 aa)
	Cre-ceh-12	CRE-CEH-12 protein. (181 aa)
	Cre-vab-3	CRE-VAB-3 protein. (462 aa)
	Cre-ceh-5	CRE-CEH-5 protein. (138 aa)
	CRE_15352	Uncharacterized protein. (91 aa)
	Cre-psa-3	CRE-PSA-3 protein. (192 aa)
	Cre-php-3	CRE-PHP-3 protein. (270 aa)
	CRE_24471	Homeobox domain-containing protein. (92 aa)
	Cre-ceh-40	CRE-CEH-40 protein. (322 aa)
	Cre-egl-5	CRE-EGL-5 protein. (223 aa)
	Cre-mab-5	CRE-MAB-5 protein. (199 aa)
	Cre-dac-1	CRE-DAC-1 protein. (388 aa)
	Cre-ceh-13	CRE-CEH-13 protein. (223 aa)
	Cre-lin-39	CRE-LIN-39 protein. (256 aa)
	Cre-ceh-51	CRE-CEH-51 protein. (241 aa)
	CRE_05123	Homeobox domain-containing protein. (206 aa)
	Cre-ceh-20	CRE-CEH-20 protein. (353 aa)
	CRE_24208	Homeobox domain-containing protein. (762 aa)
	CRE_24209	Homeobox domain-containing protein. (334 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00376	CRE_05123	E3LET5	E3N6B5	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.617
CRE_00376	CRE_15352	E3LET5	E3MCE2	Homeobox domain-containing protein.	Uncharacterized protein.	0.617
CRE_00376	CRE_24471	E3LET5	E3MFT2	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.690
CRE_00376	Cre-ceh-20	E3LET5	E3N9A2	Homeobox domain-containing protein.	CRE-CEH-20 protein.	0.859
CRE_00376	Cre-ceh-32	E3LET5	E3LPP8	Homeobox domain-containing protein.	CRE-CEH-32 protein.	0.487
CRE_00376	Cre-ceh-33	E3LET5	E3LP57	Homeobox domain-containing protein.	CRE-CEH-33 protein.	0.471
CRE_00376	Cre-ceh-40	E3LET5	E3MJK8	Homeobox domain-containing protein.	CRE-CEH-40 protein.	0.859
CRE_00376	Cre-ceh-60	E3LET5	E3LDG4	Homeobox domain-containing protein.	CRE-CEH-60 protein.	0.859
CRE_00376	Cre-egl-5	E3LET5	E3MKT7	Homeobox domain-containing protein.	CRE-EGL-5 protein.	0.652
CRE_00376	Cre-lin-39	E3LET5	E3MWF9	Homeobox domain-containing protein.	CRE-LIN-39 protein.	0.652
CRE_00376	Cre-php-3	E3LET5	E3MFT0	Homeobox domain-containing protein.	CRE-PHP-3 protein.	0.690
CRE_00376	Cre-psa-3	E3LET5	E3MCE4	Homeobox domain-containing protein.	CRE-PSA-3 protein.	0.617
CRE_00376	Cre-unc-62	E3LET5	E3LKJ3	Homeobox domain-containing protein.	CRE-UNC-62 protein.	0.710
CRE_01802	CRE_05123	E3LFJ7	E3N6B5	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.617
CRE_01802	CRE_15352	E3LFJ7	E3MCE2	Homeobox domain-containing protein.	Uncharacterized protein.	0.617
CRE_01802	CRE_24471	E3LFJ7	E3MFT2	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.690
CRE_01802	Cre-ceh-20	E3LFJ7	E3N9A2	Homeobox domain-containing protein.	CRE-CEH-20 protein.	0.859
CRE_01802	Cre-ceh-40	E3LFJ7	E3MJK8	Homeobox domain-containing protein.	CRE-CEH-40 protein.	0.859
CRE_01802	Cre-ceh-60	E3LFJ7	E3LDG4	Homeobox domain-containing protein.	CRE-CEH-60 protein.	0.859
CRE_01802	Cre-php-3	E3LFJ7	E3MFT0	Homeobox domain-containing protein.	CRE-PHP-3 protein.	0.690