(47 nodes) T-box transcription factor, and Ectoderm development network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-fax-1	CRE-FAX-1 protein. (470 aa)
	CRE_27217	Uncharacterized protein. (323 aa)
	Cre-lin-26	CRE-LIN-26 protein. (429 aa)
	CRE_02888	Uncharacterized protein. (315 aa)
	CRE_03113	Uncharacterized protein. (359 aa)
	CRE_02910	Uncharacterized protein. (323 aa)
	CRE_03812	Uncharacterized protein. (384 aa)
	CRE_04003	Uncharacterized protein. (299 aa)
	CRE_03791	Uncharacterized protein. (106 aa)
	Cre-vab-7	CRE-VAB-7 protein. (250 aa)
	Cre-tbx-9	CRE-TBX-9 protein. (375 aa)
	Cre-tbx-8	CRE-TBX-8 protein. (317 aa)
	Cre-pal-1	CRE-PAL-1 protein. (269 aa)
	Cre-tbx-43	CRE-TBX-43 protein. (429 aa)
	CRE_02357	Uncharacterized protein. (214 aa)
	CRE_09498	Uncharacterized protein. (323 aa)
	CRE_09554	Uncharacterized protein. (375 aa)
	Cre-ceh-23	CRE-CEH-23 protein. (308 aa)
	CRE_26618	Uncharacterized protein. (315 aa)
	Cre-ztf-17	CRE-ZTF-17 protein. (744 aa)
	CRE_28877	Uncharacterized protein. (312 aa)
	Cre-scrt-1	CRE-SCRT-1 protein. (221 aa)
	CRE_23044	Uncharacterized protein. (233 aa)
	CRE_31391	Uncharacterized protein. (187 aa)
	CRE_05133	Uncharacterized protein. (261 aa)
	CRE_06944	Uncharacterized protein. (347 aa)
	CRE_06921	Uncharacterized protein. (343 aa)
	CRE_06922	Uncharacterized protein. (349 aa)
	CRE_06923	Uncharacterized protein. (348 aa)
	CRE_14932	Uncharacterized protein. (333 aa)
	CRE_24747	Uncharacterized protein. (323 aa)
	CRE_24748	Uncharacterized protein. (320 aa)
	CRE_24735	Uncharacterized protein. (323 aa)
	CRE_19436	Uncharacterized protein. (143 aa)
	CRE_29025	Uncharacterized protein. (372 aa)
	CRE_27837	Uncharacterized protein. (433 aa)
	CRE_24241	Uncharacterized protein. (218 aa)
	CRE_08573	Uncharacterized protein. (320 aa)
	CRE_08574	Uncharacterized protein. (355 aa)
	CRE_08583	Uncharacterized protein. (320 aa)
	CRE_17605	Uncharacterized protein. (329 aa)
	CRE_29225	Uncharacterized protein. (423 aa)
	CRE_24845	Uncharacterized protein. (336 aa)
	CRE_01428	Uncharacterized protein. (355 aa)
	CRE_30568	Uncharacterized protein. (427 aa)
	CRE_30606	Uncharacterized protein. (423 aa)
	CRE_19614	Uncharacterized protein. (423 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01428	CRE_02357	E3NLD7	E3MIR2	Uncharacterized protein.	Uncharacterized protein.	0.554
CRE_01428	CRE_03812	E3NLD7	E3LX91	Uncharacterized protein.	Uncharacterized protein.	0.609
CRE_01428	CRE_06921	E3NLD7	E3N6K3	Uncharacterized protein.	Uncharacterized protein.	0.472
CRE_01428	CRE_06922	E3NLD7	E3N6K4	Uncharacterized protein.	Uncharacterized protein.	0.407
CRE_01428	CRE_06923	E3NLD7	E3N6K5	Uncharacterized protein.	Uncharacterized protein.	0.480
CRE_01428	CRE_06944	E3NLD7	E3N6K2	Uncharacterized protein.	Uncharacterized protein.	0.476
CRE_01428	CRE_19436	E3NLD7	E3NA30	Uncharacterized protein.	Uncharacterized protein.	0.554
CRE_01428	CRE_31391	E3NLD7	E3N5T3	Uncharacterized protein.	Uncharacterized protein.	0.585
CRE_01428	Cre-ceh-23	E3NLD7	E3MKT3	Uncharacterized protein.	CRE-CEH-23 protein.	0.571
CRE_01428	Cre-tbx-43	E3NLD7	E3MIM4	Uncharacterized protein.	CRE-TBX-43 protein.	0.634
CRE_02357	CRE_01428	E3MIR2	E3NLD7	Uncharacterized protein.	Uncharacterized protein.	0.554
CRE_02357	CRE_02888	E3MIR2	E3LWG7	Uncharacterized protein.	Uncharacterized protein.	0.610
CRE_02357	CRE_02910	E3MIR2	E3LWM4	Uncharacterized protein.	Uncharacterized protein.	0.613
CRE_02357	CRE_03113	E3MIR2	E3LWL1	Uncharacterized protein.	Uncharacterized protein.	0.612
CRE_02357	CRE_03791	E3MIR2	E3LYB1	Uncharacterized protein.	Uncharacterized protein.	0.554
CRE_02357	CRE_04003	E3MIR2	E3LYA9	Uncharacterized protein.	Uncharacterized protein.	0.700
CRE_02357	CRE_06921	E3MIR2	E3N6K3	Uncharacterized protein.	Uncharacterized protein.	0.598
CRE_02357	CRE_06922	E3MIR2	E3N6K4	Uncharacterized protein.	Uncharacterized protein.	0.601
CRE_02357	CRE_06923	E3MIR2	E3N6K5	Uncharacterized protein.	Uncharacterized protein.	0.596
CRE_02357	CRE_06944	E3MIR2	E3N6K2	Uncharacterized protein.	Uncharacterized protein.	0.665