(17 nodes) Dosage compensation, and Protein Her-1 network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	xol-1	XO lethal protein 1. (451 aa)
	CRE_32640	Uncharacterized protein. (451 aa)
	Cre-dpy-30	CRE-DPY-30 protein. (127 aa)
	CRE_26473	Uncharacterized protein. (156 aa)
	Cre-ceh-38	One cut domain family member. (510 aa)
	Cre-her-1	CRE-HER-1 protein. (180 aa)
	Cre-dpy-21	CRE-DPY-21 protein. (1744 aa)
	Cre-sdc-1	CRE-SDC-1 protein. (1403 aa)
	CRE_08329	Uncharacterized protein. (289 aa)
	CRE_10370	Uncharacterized protein. (452 aa)
	Cre-sea-2	CRE-SEA-2 protein. (1341 aa)
	Cre-sdc-3	CRE-SDC-3 protein. (942 aa)
	CRE_08553	Uncharacterized protein. (433 aa)
	Cre-sex-1	CRE-SEX-1 protein. (518 aa)
	CRE_03497	Uncharacterized protein. (280 aa)
	CRE_23235	Uncharacterized protein. (228 aa)
	CRE_12432	Uncharacterized protein. (347 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_03497	CRE_10370	E3NK35	E3MQL2	Uncharacterized protein.	Uncharacterized protein.	0.535
CRE_03497	CRE_26473	E3NK35	E3LQQ2	Uncharacterized protein.	Uncharacterized protein.	0.466
CRE_03497	CRE_32640	E3NK35	E3LC89	Uncharacterized protein.	Uncharacterized protein.	0.547
CRE_03497	Cre-ceh-38	E3NK35	E3LQQ3	Uncharacterized protein.	One cut domain family member.	0.466
CRE_03497	Cre-her-1	E3NK35	E3M9V5	Uncharacterized protein.	CRE-HER-1 protein.	0.461
CRE_03497	Cre-sea-2	E3NK35	E3MQL3	Uncharacterized protein.	CRE-SEA-2 protein.	0.535
CRE_03497	Cre-sex-1	E3NK35	E3NHK2	Uncharacterized protein.	CRE-SEX-1 protein.	0.597
CRE_03497	xol-1	E3NK35	B6A8F3	Uncharacterized protein.	XO lethal protein 1.	0.547
CRE_08329	Cre-dpy-21	E3MPF9	E3MF92	Uncharacterized protein.	CRE-DPY-21 protein.	0.438
CRE_08329	Cre-sdc-3	E3MPF9	E3NCJ6	Uncharacterized protein.	CRE-SDC-3 protein.	0.586
CRE_08553	CRE_10370	E3NEL7	E3MQL2	Uncharacterized protein.	Uncharacterized protein.	0.535
CRE_08553	CRE_26473	E3NEL7	E3LQQ2	Uncharacterized protein.	Uncharacterized protein.	0.466
CRE_08553	CRE_32640	E3NEL7	E3LC89	Uncharacterized protein.	Uncharacterized protein.	0.547
CRE_08553	Cre-ceh-38	E3NEL7	E3LQQ3	Uncharacterized protein.	One cut domain family member.	0.466
CRE_08553	Cre-her-1	E3NEL7	E3M9V5	Uncharacterized protein.	CRE-HER-1 protein.	0.461
CRE_08553	Cre-sea-2	E3NEL7	E3MQL3	Uncharacterized protein.	CRE-SEA-2 protein.	0.535
CRE_08553	Cre-sex-1	E3NEL7	E3NHK2	Uncharacterized protein.	CRE-SEX-1 protein.	0.597
CRE_08553	xol-1	E3NEL7	B6A8F3	Uncharacterized protein.	XO lethal protein 1.	0.547
CRE_10370	CRE_03497	E3MQL2	E3NK35	Uncharacterized protein.	Uncharacterized protein.	0.535
CRE_10370	CRE_08553	E3MQL2	E3NEL7	Uncharacterized protein.	Uncharacterized protein.	0.535