(35 nodes) Protein patched/dispatched, and Ground-like domain network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-grd-7	CRE-GRD-7 protein. (734 aa)
	CRE_00747	Uncharacterized protein. (519 aa)
	CRE_02086	Uncharacterized protein. (401 aa)
	Cre-ptr-18	CRE-PTR-18 protein. (739 aa)
	Cre-ptr-20	CRE-PTR-20 protein. (860 aa)
	CRE_09204	Uncharacterized protein. (105 aa)
	Cre-grl-27	CRE-GRL-27 protein. (142 aa)
	Cre-lgc-29	CRE-LGC-29 protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (415 aa)
	Cre-grl-12	CRE-GRL-12 protein. (213 aa)
	Cre-grd-8	CRE-GRD-8 protein. (391 aa)
	Cre-grl-10	CRE-GRL-10 protein. (282 aa)
	Cre-grl-13	CRE-GRL-13 protein. (293 aa)
	Cre-grl-17	CRE-GRL-17 protein. (397 aa)
	Cre-grl-8	CRE-GRL-8 protein. (225 aa)
	Cre-grl-2	CRE-GRL-2 protein. (366 aa)
	Cre-grl-1	CRE-GRL-1 protein. (345 aa)
	Cre-ptr-11	CRE-PTR-11 protein. (833 aa)
	Cre-ptr-19	CRE-PTR-19 protein. (1021 aa)
	Cre-ptr-8	CRE-PTR-8 protein. (907 aa)
	CRE_11926	Uncharacterized protein. (432 aa)
	Cre-ptr-6	CRE-PTR-6 protein. (567 aa)
	Cre-grl-4	CRE-GRL-4 protein. (273 aa)
	Cre-ptr-5	CRE-PTR-5 protein. (1020 aa)
	Cre-grd-6	CRE-GRD-6 protein. (641 aa)
	Cre-grl-16	CRE-GRL-16 protein. (483 aa)
	Cre-ptr-21	CRE-PTR-21 protein. (912 aa)
	CRE_24036	Uncharacterized protein. (974 aa)
	Cre-ptr-2	CRE-PTR-2 protein. (965 aa)
	Cre-ptr-24.1	CRE-PTR-24.1 protein. (893 aa)
	Cre-grd-12	CRE-GRD-12 protein. (276 aa)
	Cre-ptr-12	CRE-PTR-12 protein. (897 aa)
	Cre-ptr-17	CRE-PTR-17 protein. (900 aa)
	Cre-ptr-1	CRE-PTR-1 protein. (986 aa)
	Cre-ptr-24.2	CRE-PTR-24.2 protein. (851 aa)
	Cre-grl-19	CRE-GRL-19 protein. (145 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00747	Cre-grd-7	E3LE42	E3LD23	Uncharacterized protein.	CRE-GRD-7 protein.	0.793
CRE_02086	Cre-ptr-11	E3LEY4	E3LXA6	Uncharacterized protein.	CRE-PTR-11 protein.	0.540
CRE_02086	Cre-ptr-12	E3LEY4	E3MYI6	Uncharacterized protein.	CRE-PTR-12 protein.	0.426
CRE_02086	Cre-ptr-17	E3LEY4	E3N2Q3	Uncharacterized protein.	CRE-PTR-17 protein.	0.540
CRE_02086	Cre-ptr-18	E3LEY4	E3LEY5	Uncharacterized protein.	CRE-PTR-18 protein.	0.806
CRE_02086	Cre-ptr-5	E3LEY4	E3MAK7	Uncharacterized protein.	CRE-PTR-5 protein.	0.426
CRE_02086	Cre-ptr-6	E3LEY4	E3M4I1	Uncharacterized protein.	CRE-PTR-6 protein.	0.513
CRE_09204	Cre-grd-8	E3LHH3	E3LK89	Uncharacterized protein.	CRE-GRD-8 protein.	0.464
CRE_09204	Cre-grl-17	E3LHH3	E3LPD9	Uncharacterized protein.	CRE-GRL-17 protein.	0.458
CRE_09204	Cre-grl-4	E3LHH3	E3M790	Uncharacterized protein.	CRE-GRL-4 protein.	0.407
CRE_11926	Cre-grl-10	E3M4I0	E3LKE0	Uncharacterized protein.	CRE-GRL-10 protein.	0.503
CRE_11926	Cre-grl-17	E3M4I0	E3LPD9	Uncharacterized protein.	CRE-GRL-17 protein.	0.513
CRE_11926	Cre-grl-2	E3M4I0	E3LTY4	Uncharacterized protein.	CRE-GRL-2 protein.	0.509
CRE_11926	Cre-grl-4	E3M4I0	E3M790	Uncharacterized protein.	CRE-GRL-4 protein.	0.431
CRE_11926	Cre-ptr-6	E3M4I0	E3M4I1	Uncharacterized protein.	CRE-PTR-6 protein.	0.795
CRE_24036	Cre-grd-7	E3MG54	E3LD23	Uncharacterized protein.	CRE-GRD-7 protein.	0.428
CRE_24036	Cre-grl-8	E3MG54	E3LTH1	Uncharacterized protein.	CRE-GRL-8 protein.	0.428
Cre-grd-12	Cre-grl-1	E3MN56	E3LUA2	CRE-GRD-12 protein.	CRE-GRL-1 protein.	0.638
Cre-grd-12	Cre-grl-10	E3MN56	E3LKE0	CRE-GRD-12 protein.	CRE-GRL-10 protein.	0.646
Cre-grd-12	Cre-grl-13	E3MN56	E3LKR6	CRE-GRD-12 protein.	CRE-GRL-13 protein.	0.642