(71 nodes) Mixed, incl. Protein Lag2, and Plasma lipoprotein remodeling network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-vit-5	CRE-VIT-5 protein. (1599 aa)
	CRE_00508	VWFD domain-containing protein. (758 aa)
	CRE_00509	Vitellogenin domain-containing protein. (763 aa)
	CRE_00058	Uncharacterized protein. (2545 aa)
	CRE_00950	Vitellogenin domain-containing protein. (370 aa)
	CRE_00475	Vitellogenin domain-containing protein. (480 aa)
	Cre-lgx-1	CRE-LGX-1 protein. (2473 aa)
	CRE_00232	Uncharacterized protein. (682 aa)
	Cre-vit-2	CRE-VIT-2 protein. (1620 aa)
	CRE_00388	Uncharacterized protein. (1613 aa)
	CRE_00880	DUF1943 domain-containing protein. (151 aa)
	CRE_00882	DUF1943 domain-containing protein. (409 aa)
	CRE_00395	Uncharacterized protein. (1596 aa)
	Cre-lec-2	CRE-LEC-2 protein. (1365 aa)
	Cre-lag-2	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (398 aa)
	Cre-ceh-27	CRE-CEH-27 protein. (266 aa)
	Cre-agr-1	CRE-AGR-1 protein. (1376 aa)
	CRE_26246	Uncharacterized protein. (793 aa)
	Cre-dsl-7	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (313 aa)
	CRE_29515	Thioredoxin domain-containing protein. (420 aa)
	CRE_03073	Uncharacterized protein. (348 aa)
	egg-1	LDL receptor repeat-containing protein egg-1; Probable receptor which is required for the oocyte-to-zygote transition although its exact function is controversial (By similarity). Seems to be required for fertilization probably by promoting the interaction or fusion between sperm and oocyte. Conversely, shown to be dispensable for fertilization but required for the formation of a continuous and cohesive eggshell chitin layer by maintaining a homogenous distribution of chitin synthase chs-1 at the unfertilized oocyte cell membrane (By similarity). Appears to recruit or maintain together [...] (551 aa)
	Cre-pqn-25	CRE-PQN-25 protein. (787 aa)
	CRE_05476	Uncharacterized protein. (225 aa)
	Cre-sdz-23	CRE-SDZ-23 protein. (252 aa)
	CRE_06490	Uncharacterized protein. (584 aa)
	CRE_06491	Uncharacterized protein. (287 aa)
	CRE_06294	Uncharacterized protein. (787 aa)
	CRE_06302	Uncharacterized protein. (534 aa)
	CRE_06310	Uncharacterized protein. (454 aa)
	CRE_07561	Uncharacterized protein. (681 aa)
	CRE_10991	Uncharacterized protein. (449 aa)
	CRE_10167	Thioredoxin domain-containing protein. (409 aa)
	Cre-vit-6	CRE-VIT-6 protein. (1634 aa)
	CRE_12701	Uncharacterized protein. (345 aa)
	CRE_12820	EGF-like domain-containing protein. (371 aa)
	CRE_14056	Uncharacterized protein. (459 aa)
	CRE_20234	Tyrosine-protein phosphatase domain-containing protein. (370 aa)
	CRE_20705	Uncharacterized protein. (702 aa)
	Cre-lrp-2	CRE-LRP-2 protein. (4864 aa)
	CRE_22790	Uncharacterized protein. (3198 aa)
	CRE_24983	Uncharacterized protein. (431 aa)
	CRE_24984	I-set domain-containing protein. (417 aa)
	CRE_25736	Uncharacterized protein. (221 aa)
	CRE_25672	Uncharacterized protein. (751 aa)
	CRE_29910	Uncharacterized protein. (273 aa)
	CRE_13528	Uncharacterized protein. (250 aa)
	CRE_14198	Uncharacterized protein. (395 aa)
	Cre-scav-6	CRE-SCAV-6 protein; Belongs to the CD36 family. (210 aa)
	Cre-dsc-4	CRE-DSC-4 protein. (891 aa)
	CRE_08495	Uncharacterized protein. (414 aa)
	CRE_21491	Uncharacterized protein. (194 aa)
	CRE_21492	EGF-like domain-containing protein. (312 aa)
	CRE_21493	Uncharacterized protein. (319 aa)
	CRE_21494	Uncharacterized protein. (321 aa)
	CRE_21495	Uncharacterized protein. (319 aa)
	CRE_21496	EGF-like domain-containing protein. (272 aa)
	CRE_13716	Uncharacterized protein. (210 aa)
	Cre-lrp-1	CRE-LRP-1 protein. (4438 aa)
	Cre-dsl-3	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (265 aa)
	Cre-ost-1	CRE-OST-1 protein. (264 aa)
	CRE_14304	Homeobox domain-containing protein. (663 aa)
	CRE_27883	Uncharacterized protein. (316 aa)
	CRE_27871	Uncharacterized protein. (317 aa)
	CRE_27872	EGF-like domain-containing protein. (321 aa)
	CRE_27873	EGF-like domain-containing protein. (256 aa)
	CRE_11491	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (266 aa)
	CRE_15802	Uncharacterized protein. (92 aa)
	CRE_11552	Uncharacterized protein. (362 aa)
	CRE_20120	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (266 aa)
	CRE_11642	Tyrosine-protein phosphatase domain-containing protein. (136 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00058	CRE_00388	E3LCU1	E3LEV7	Uncharacterized protein.	Uncharacterized protein.	0.463
CRE_00058	CRE_00395	E3LCU1	E3LEW7	Uncharacterized protein.	Uncharacterized protein.	0.463
CRE_00058	CRE_00475	E3LCU1	E3LD16	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.463
CRE_00058	CRE_00508	E3LCU1	E3LCK5	Uncharacterized protein.	VWFD domain-containing protein.	0.463
CRE_00058	CRE_00509	E3LCU1	E3LCK6	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.463
CRE_00058	CRE_00880	E3LCU1	E3LEW0	Uncharacterized protein.	DUF1943 domain-containing protein.	0.463
CRE_00058	CRE_00882	E3LCU1	E3LEW4	Uncharacterized protein.	DUF1943 domain-containing protein.	0.463
CRE_00058	CRE_00950	E3LCU1	E3LD15	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.463
CRE_00058	CRE_06294	E3LCU1	E3M125	Uncharacterized protein.	Uncharacterized protein.	0.518
CRE_00058	CRE_06302	E3LCU1	E3M161	Uncharacterized protein.	Uncharacterized protein.	0.518
CRE_00058	CRE_06310	E3LCU1	E3M177	Uncharacterized protein.	Uncharacterized protein.	0.518
CRE_00058	CRE_06490	E3LCU1	E3M122	Uncharacterized protein.	Uncharacterized protein.	0.518
CRE_00058	CRE_06491	E3LCU1	E3M123	Uncharacterized protein.	Uncharacterized protein.	0.518
CRE_00058	CRE_07561	E3LCU1	E3M2M0	Uncharacterized protein.	Uncharacterized protein.	0.518
CRE_00058	CRE_20705	E3LCU1	E3MFH4	Uncharacterized protein.	Uncharacterized protein.	0.504
CRE_00058	CRE_22790	E3LCU1	E3MHJ7	Uncharacterized protein.	Uncharacterized protein.	0.518
CRE_00058	CRE_25672	E3LCU1	E3MLD6	Uncharacterized protein.	Uncharacterized protein.	0.475
CRE_00058	CRE_25736	E3LCU1	E3MLC8	Uncharacterized protein.	Uncharacterized protein.	0.475
CRE_00058	Cre-lec-2	E3LCU1	E3LGZ7	Uncharacterized protein.	CRE-LEC-2 protein.	0.607
CRE_00058	Cre-lrp-1	E3LCU1	E3NCL0	Uncharacterized protein.	CRE-LRP-1 protein.	0.475