(5 nodes) Von Willebrand factor, type D domain, and Lipoprotein transport network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-vit-5	CRE-VIT-5 protein. (1599 aa)
	CRE_00508	VWFD domain-containing protein. (758 aa)
	Cre-vit-6	CRE-VIT-6 protein. (1634 aa)
	Cre-dsc-4	CRE-DSC-4 protein. (891 aa)
	CRE_14304	Homeobox domain-containing protein. (663 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00508	CRE_14304	E3LCK5	E3NEY0	VWFD domain-containing protein.	Homeobox domain-containing protein.	0.660
CRE_00508	Cre-dsc-4	E3LCK5	E3N5T2	VWFD domain-containing protein.	CRE-DSC-4 protein.	0.887
CRE_00508	Cre-vit-5	E3LCK5	E3LCE2	VWFD domain-containing protein.	CRE-VIT-5 protein.	0.609
CRE_00508	Cre-vit-6	E3LCK5	E3M6R6	VWFD domain-containing protein.	CRE-VIT-6 protein.	0.743
CRE_14304	CRE_00508	E3NEY0	E3LCK5	Homeobox domain-containing protein.	VWFD domain-containing protein.	0.660
CRE_14304	Cre-dsc-4	E3NEY0	E3N5T2	Homeobox domain-containing protein.	CRE-DSC-4 protein.	0.927
CRE_14304	Cre-vit-5	E3NEY0	E3LCE2	Homeobox domain-containing protein.	CRE-VIT-5 protein.	0.660
CRE_14304	Cre-vit-6	E3NEY0	E3M6R6	Homeobox domain-containing protein.	CRE-VIT-6 protein.	0.660
Cre-dsc-4	CRE_00508	E3N5T2	E3LCK5	CRE-DSC-4 protein.	VWFD domain-containing protein.	0.887
Cre-dsc-4	CRE_14304	E3N5T2	E3NEY0	CRE-DSC-4 protein.	Homeobox domain-containing protein.	0.927
Cre-dsc-4	Cre-vit-5	E3N5T2	E3LCE2	CRE-DSC-4 protein.	CRE-VIT-5 protein.	0.887
Cre-dsc-4	Cre-vit-6	E3N5T2	E3M6R6	CRE-DSC-4 protein.	CRE-VIT-6 protein.	0.887
Cre-vit-5	CRE_00508	E3LCE2	E3LCK5	CRE-VIT-5 protein.	VWFD domain-containing protein.	0.609
Cre-vit-5	CRE_14304	E3LCE2	E3NEY0	CRE-VIT-5 protein.	Homeobox domain-containing protein.	0.660
Cre-vit-5	Cre-dsc-4	E3LCE2	E3N5T2	CRE-VIT-5 protein.	CRE-DSC-4 protein.	0.887
Cre-vit-5	Cre-vit-6	E3LCE2	E3M6R6	CRE-VIT-5 protein.	CRE-VIT-6 protein.	0.792
Cre-vit-6	CRE_00508	E3M6R6	E3LCK5	CRE-VIT-6 protein.	VWFD domain-containing protein.	0.743
Cre-vit-6	CRE_14304	E3M6R6	E3NEY0	CRE-VIT-6 protein.	Homeobox domain-containing protein.	0.660
Cre-vit-6	Cre-dsc-4	E3M6R6	E3N5T2	CRE-VIT-6 protein.	CRE-DSC-4 protein.	0.887
Cre-vit-6	Cre-vit-5	E3M6R6	E3LCE2	CRE-VIT-6 protein.	CRE-VIT-5 protein.	0.792