10 items (Caenorhabditis remanei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_00756	Uncharacterized protein. (324 aa)
	Cre-rop-1	CRE-ROP-1 protein. (644 aa)
	CRE_03683	Uncharacterized protein. (401 aa)
	CRE_06473	Uncharacterized protein. (1078 aa)
	CRE_20798	DZF domain-containing protein. (841 aa)
	CRE_31270	DZF domain-containing protein. (238 aa)
	CRE_04924	Uncharacterized protein. (394 aa)
	CRE_05888	Uncharacterized protein. (449 aa)
	CRE_01205	Uncharacterized protein. (225 aa)
	inx-2	Innexin; Structural component of the gap junctions. Belongs to the pannexin family. (820 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00756	CRE_04924	E3LE55	E3MND6	Uncharacterized protein.	Uncharacterized protein.	0.785
CRE_00756	CRE_05888	E3LE55	E3MNL4	Uncharacterized protein.	Uncharacterized protein.	0.651
CRE_00756	CRE_06473	E3LE55	E3M190	Uncharacterized protein.	Uncharacterized protein.	0.573
CRE_00756	Cre-rop-1	E3LE55	E3LTQ3	Uncharacterized protein.	CRE-ROP-1 protein.	0.678
CRE_00756	inx-2	E3LE55	E3NFH5	Uncharacterized protein.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.651
CRE_01205	CRE_20798	E3N4P7	E3MFL6	Uncharacterized protein.	DZF domain-containing protein.	0.419
CRE_01205	CRE_31270	E3N4P7	E3MLJ8	Uncharacterized protein.	DZF domain-containing protein.	0.419
CRE_03683	CRE_04924	E3LXN5	E3MND6	Uncharacterized protein.	Uncharacterized protein.	0.712
CRE_03683	Cre-rop-1	E3LXN5	E3LTQ3	Uncharacterized protein.	CRE-ROP-1 protein.	0.826
CRE_04924	CRE_00756	E3MND6	E3LE55	Uncharacterized protein.	Uncharacterized protein.	0.785
CRE_04924	CRE_03683	E3MND6	E3LXN5	Uncharacterized protein.	Uncharacterized protein.	0.712
CRE_04924	CRE_05888	E3MND6	E3MNL4	Uncharacterized protein.	Uncharacterized protein.	0.668
CRE_04924	CRE_06473	E3MND6	E3M190	Uncharacterized protein.	Uncharacterized protein.	0.536
CRE_04924	CRE_20798	E3MND6	E3MFL6	Uncharacterized protein.	DZF domain-containing protein.	0.942
CRE_04924	CRE_31270	E3MND6	E3MLJ8	Uncharacterized protein.	DZF domain-containing protein.	0.942
CRE_04924	Cre-rop-1	E3MND6	E3LTQ3	Uncharacterized protein.	CRE-ROP-1 protein.	0.703
CRE_04924	inx-2	E3MND6	E3NFH5	Uncharacterized protein.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.668
CRE_05888	CRE_00756	E3MNL4	E3LE55	Uncharacterized protein.	Uncharacterized protein.	0.651
CRE_05888	CRE_04924	E3MNL4	E3MND6	Uncharacterized protein.	Uncharacterized protein.	0.668
CRE_05888	CRE_06473	E3MNL4	E3M190	Uncharacterized protein.	Uncharacterized protein.	0.531