(21 nodes) Mixed, incl. Helix loop helix domain, and Antimicrobial peptides network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_02070	Homeobox domain-containing protein. (407 aa)
	CRE_26464	Uncharacterized protein. (252 aa)
	Cre-abts-3	CRE-ABTS-3 protein. (977 aa)
	Cre-hlh-11	CRE-HLH-11 protein. (427 aa)
	Cre-tag-347	CRE-TAG-347 protein. (465 aa)
	CRE_03038	BHLH domain-containing protein. (274 aa)
	CRE_02853	BHLH domain-containing protein. (279 aa)
	CRE_02855	Uncharacterized protein. (277 aa)
	CRE_03774	Uncharacterized protein. (3726 aa)
	CRE_11119	Uncharacterized protein. (173 aa)
	CRE_11120	MADF domain-containing protein. (156 aa)
	CRE_10998	ZP domain-containing protein. (509 aa)
	Cre-nhx-8	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. (685 aa)
	CRE_22786	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (721 aa)
	CRE_31266	Uncharacterized protein. (457 aa)
	CRE_31268	BHLH domain-containing protein. (308 aa)
	Cre-ceh-48	One cut domain family member. (465 aa)
	CRE_24794	C2H2-type domain-containing protein. (111 aa)
	CRE_24795	Uncharacterized protein. (222 aa)
	Cre-ref-1	CRE-REF-1 protein. (369 aa)
	CRE_22230	One cut domain family member. (480 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_02070	CRE_22230	E3LH60	E3NQV5	Homeobox domain-containing protein.	One cut domain family member.	0.535
CRE_02070	Cre-ceh-48	E3LH60	E3N3W7	Homeobox domain-containing protein.	One cut domain family member.	0.535
CRE_02853	CRE_11119	E3LW88	E3M5N5	BHLH domain-containing protein.	Uncharacterized protein.	0.432
CRE_02853	CRE_11120	E3LW88	E3M5N6	BHLH domain-containing protein.	MADF domain-containing protein.	0.432
CRE_02855	CRE_11119	E3LW90	E3M5N5	Uncharacterized protein.	Uncharacterized protein.	0.432
CRE_02855	CRE_11120	E3LW90	E3M5N6	Uncharacterized protein.	MADF domain-containing protein.	0.432
CRE_03038	CRE_11119	E3LW87	E3M5N5	BHLH domain-containing protein.	Uncharacterized protein.	0.432
CRE_03038	CRE_11120	E3LW87	E3M5N6	BHLH domain-containing protein.	MADF domain-containing protein.	0.432
CRE_10998	Cre-hlh-11	E3M5X2	E3LSB0	ZP domain-containing protein.	CRE-HLH-11 protein.	0.639
CRE_11119	CRE_02853	E3M5N5	E3LW88	Uncharacterized protein.	BHLH domain-containing protein.	0.432
CRE_11119	CRE_02855	E3M5N5	E3LW90	Uncharacterized protein.	Uncharacterized protein.	0.432
CRE_11119	CRE_03038	E3M5N5	E3LW87	Uncharacterized protein.	BHLH domain-containing protein.	0.432
CRE_11119	CRE_22230	E3M5N5	E3NQV5	Uncharacterized protein.	One cut domain family member.	0.521
CRE_11119	Cre-ceh-48	E3M5N5	E3N3W7	Uncharacterized protein.	One cut domain family member.	0.521
CRE_11120	CRE_02853	E3M5N6	E3LW88	MADF domain-containing protein.	BHLH domain-containing protein.	0.432
CRE_11120	CRE_02855	E3M5N6	E3LW90	MADF domain-containing protein.	Uncharacterized protein.	0.432
CRE_11120	CRE_03038	E3M5N6	E3LW87	MADF domain-containing protein.	BHLH domain-containing protein.	0.432
CRE_11120	CRE_22230	E3M5N6	E3NQV5	MADF domain-containing protein.	One cut domain family member.	0.521
CRE_11120	Cre-ceh-48	E3M5N6	E3N3W7	MADF domain-containing protein.	One cut domain family member.	0.521
CRE_22230	CRE_02070	E3NQV5	E3LH60	One cut domain family member.	Homeobox domain-containing protein.	0.535