(5 nodes) PLAC, and Reeler domain network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_00856	Peptidase M12B domain-containing protein. (949 aa)
	CRE_18942	Uncharacterized protein. (439 aa)
	Cre-spon-1	CRE-SPON-1 protein. (831 aa)
	CRE_30816	Uncharacterized protein. (454 aa)
	CRE_29771	Uncharacterized protein. (1045 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00856	CRE_18942	E3LEQ3	E3LK90	Peptidase M12B domain-containing protein.	Uncharacterized protein.	0.592
CRE_00856	CRE_29771	E3LEQ3	E3LVP9	Peptidase M12B domain-containing protein.	Uncharacterized protein.	0.723
CRE_00856	CRE_30816	E3LEQ3	E3LUF8	Peptidase M12B domain-containing protein.	Uncharacterized protein.	0.693
CRE_00856	Cre-spon-1	E3LEQ3	E3LQK5	Peptidase M12B domain-containing protein.	CRE-SPON-1 protein.	0.651
CRE_18942	CRE_00856	E3LK90	E3LEQ3	Uncharacterized protein.	Peptidase M12B domain-containing protein.	0.592
CRE_18942	CRE_29771	E3LK90	E3LVP9	Uncharacterized protein.	Uncharacterized protein.	0.622
CRE_18942	CRE_30816	E3LK90	E3LUF8	Uncharacterized protein.	Uncharacterized protein.	0.703
CRE_18942	Cre-spon-1	E3LK90	E3LQK5	Uncharacterized protein.	CRE-SPON-1 protein.	0.664
CRE_29771	CRE_00856	E3LVP9	E3LEQ3	Uncharacterized protein.	Peptidase M12B domain-containing protein.	0.723
CRE_29771	CRE_18942	E3LVP9	E3LK90	Uncharacterized protein.	Uncharacterized protein.	0.622
CRE_29771	CRE_30816	E3LVP9	E3LUF8	Uncharacterized protein.	Uncharacterized protein.	0.774
CRE_29771	Cre-spon-1	E3LVP9	E3LQK5	Uncharacterized protein.	CRE-SPON-1 protein.	0.655
CRE_30816	CRE_00856	E3LUF8	E3LEQ3	Uncharacterized protein.	Peptidase M12B domain-containing protein.	0.693
CRE_30816	CRE_18942	E3LUF8	E3LK90	Uncharacterized protein.	Uncharacterized protein.	0.703
CRE_30816	CRE_29771	E3LUF8	E3LVP9	Uncharacterized protein.	Uncharacterized protein.	0.774
CRE_30816	Cre-spon-1	E3LUF8	E3LQK5	Uncharacterized protein.	CRE-SPON-1 protein.	0.810
Cre-spon-1	CRE_00856	E3LQK5	E3LEQ3	CRE-SPON-1 protein.	Peptidase M12B domain-containing protein.	0.651
Cre-spon-1	CRE_18942	E3LQK5	E3LK90	CRE-SPON-1 protein.	Uncharacterized protein.	0.664
Cre-spon-1	CRE_29771	E3LQK5	E3LVP9	CRE-SPON-1 protein.	Uncharacterized protein.	0.655
Cre-spon-1	CRE_30816	E3LQK5	E3LUF8	CRE-SPON-1 protein.	Uncharacterized protein.	0.810