(15 nodes) Mixed, incl. Protein Pecanex, and Transmembrane protein 134 network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-nhr-120	CRE-NHR-120 protein. (525 aa)
	Cre-pqn-73	CRE-PQN-73 protein. (810 aa)
	CRE_28183	Uncharacterized protein. (1477 aa)
	CRE_28184	Pecanex_C domain-containing protein. (847 aa)
	Cre-ptr-15	CRE-PTR-15 protein. (844 aa)
	CRE_27351	Uncharacterized protein. (257 aa)
	Cre-aff-1	CRE-AFF-1 protein. (588 aa)
	Cre-ptr-9	CRE-PTR-9 protein. (860 aa)
	Cre-ptr-10	CRE-PTR-10 protein. (898 aa)
	CRE_03855	Uncharacterized protein. (445 aa)
	Cre-ptr-14	CRE-PTR-14 protein. (870 aa)
	Cre-ucp-4	CRE-UCP-4 protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (347 aa)
	CRE_20686	Uncharacterized protein. (305 aa)
	CRE_25904	Uncharacterized protein. (165 aa)
	CRE_24870	Uncharacterized protein. (124 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_03855	Cre-ucp-4	E3LXH6	E3MDA0	Uncharacterized protein.	CRE-UCP-4 protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.424
CRE_24870	Cre-ptr-10	E3NMM9	E3LXC1	Uncharacterized protein.	CRE-PTR-10 protein.	0.502
CRE_25904	Cre-ptr-10	E3NGE7	E3LXC1	Uncharacterized protein.	CRE-PTR-10 protein.	0.502
CRE_28183	CRE_28184	E3LMR9	E3LMS1	Uncharacterized protein.	Pecanex_C domain-containing protein.	0.920
CRE_28184	CRE_28183	E3LMS1	E3LMR9	Pecanex_C domain-containing protein.	Uncharacterized protein.	0.920
Cre-aff-1	Cre-ucp-4	E3LQT3	E3MDA0	CRE-AFF-1 protein.	CRE-UCP-4 protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.424
Cre-nhr-120	Cre-pqn-73	E3LDE7	E3LGG0	CRE-NHR-120 protein.	CRE-PQN-73 protein.	0.793
Cre-pqn-73	Cre-nhr-120	E3LGG0	E3LDE7	CRE-PQN-73 protein.	CRE-NHR-120 protein.	0.793
Cre-pqn-73	Cre-ptr-15	E3LGG0	E3LPI0	CRE-PQN-73 protein.	CRE-PTR-15 protein.	0.553
Cre-ptr-10	CRE_24870	E3LXC1	E3NMM9	CRE-PTR-10 protein.	Uncharacterized protein.	0.502
Cre-ptr-10	CRE_25904	E3LXC1	E3NGE7	CRE-PTR-10 protein.	Uncharacterized protein.	0.502
Cre-ptr-15	Cre-pqn-73	E3LPI0	E3LGG0	CRE-PTR-15 protein.	CRE-PQN-73 protein.	0.553
Cre-ucp-4	CRE_03855	E3MDA0	E3LXH6	CRE-UCP-4 protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.424
Cre-ucp-4	Cre-aff-1	E3MDA0	E3LQT3	CRE-UCP-4 protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	CRE-AFF-1 protein.	0.424