16 items (Caenorhabditis remanei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-rpn-12	CRE-RPN-12 protein. (250 aa)
	Cre-rpt-5	CRE-RPT-5 protein; Belongs to the AAA ATPase family. (430 aa)
	Cre-rpn-10	CRE-RPN-10 protein. (350 aa)
	Cre-rpt-1	CRE-RPT-1 protein; Belongs to the AAA ATPase family. (435 aa)
	Cre-rpt-2	CRE-RPT-2 protein; Belongs to the AAA ATPase family. (443 aa)
	Cre-rpn-2	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family. (978 aa)
	CRE_03157	RPN13_C domain-containing protein. (387 aa)
	CRE_03184	AAA domain-containing protein; Belongs to the AAA ATPase family. (443 aa)
	Cre-rpn-6	CRE-RPN-6 protein. (420 aa)
	Cre-rpn-3	CRE-RPN-3 protein. (506 aa)
	Cre-rpn-11	CRE-RPN-11 protein. (312 aa)
	Cre-rpn-5	CRE-RPN-5 protein. (507 aa)
	Cre-rpn-1	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family. (989 aa)
	CRE_25761	PCI domain-containing protein. (372 aa)
	Cre-rpt-6	CRE-RPT-6 protein; Belongs to the AAA ATPase family. (408 aa)
	Cre-usp-14	CRE-USP-14 protein; Belongs to the peptidase C19 family. (546 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_03157	CRE_03184	E3LWV1	E3LX06	RPN13_C domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.997
CRE_03157	CRE_25761	E3LWV1	E3N5P8	RPN13_C domain-containing protein.	PCI domain-containing protein.	0.991
CRE_03157	Cre-rpn-1	E3LWV1	E3N3U9	RPN13_C domain-containing protein.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.991
CRE_03157	Cre-rpn-10	E3LWV1	E3LMP7	RPN13_C domain-containing protein.	CRE-RPN-10 protein.	0.999
CRE_03157	Cre-rpn-11	E3LWV1	E3MQH8	RPN13_C domain-containing protein.	CRE-RPN-11 protein.	0.995
CRE_03157	Cre-rpn-12	E3LWV1	E3LF40	RPN13_C domain-containing protein.	CRE-RPN-12 protein.	0.998
CRE_03157	Cre-rpn-2	E3LWV1	E3LWQ4	RPN13_C domain-containing protein.	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family.	0.996
CRE_03157	Cre-rpn-3	E3LWV1	E3MI14	RPN13_C domain-containing protein.	CRE-RPN-3 protein.	0.998
CRE_03157	Cre-rpn-5	E3LWV1	E3MXE6	RPN13_C domain-containing protein.	CRE-RPN-5 protein.	0.996
CRE_03157	Cre-rpn-6	E3LWV1	E3MCI4	RPN13_C domain-containing protein.	CRE-RPN-6 protein.	0.988
CRE_03157	Cre-rpt-1	E3LWV1	E3LPW3	RPN13_C domain-containing protein.	CRE-RPT-1 protein; Belongs to the AAA ATPase family.	0.999
CRE_03157	Cre-rpt-2	E3LWV1	E3LUK4	RPN13_C domain-containing protein.	CRE-RPT-2 protein; Belongs to the AAA ATPase family.	0.997
CRE_03157	Cre-rpt-5	E3LWV1	E3LMJ8	RPN13_C domain-containing protein.	CRE-RPT-5 protein; Belongs to the AAA ATPase family.	0.998
CRE_03157	Cre-rpt-6	E3LWV1	E3NCN2	RPN13_C domain-containing protein.	CRE-RPT-6 protein; Belongs to the AAA ATPase family.	0.992
CRE_03157	Cre-usp-14	E3LWV1	E3NIU2	RPN13_C domain-containing protein.	CRE-USP-14 protein; Belongs to the peptidase C19 family.	0.997
CRE_03184	CRE_03157	E3LX06	E3LWV1	AAA domain-containing protein; Belongs to the AAA ATPase family.	RPN13_C domain-containing protein.	0.997
CRE_03184	CRE_25761	E3LX06	E3N5P8	AAA domain-containing protein; Belongs to the AAA ATPase family.	PCI domain-containing protein.	0.994
CRE_03184	Cre-rpn-1	E3LX06	E3N3U9	AAA domain-containing protein; Belongs to the AAA ATPase family.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.994
CRE_03184	Cre-rpn-10	E3LX06	E3LMP7	AAA domain-containing protein; Belongs to the AAA ATPase family.	CRE-RPN-10 protein.	0.999
CRE_03184	Cre-rpn-11	E3LX06	E3MQH8	AAA domain-containing protein; Belongs to the AAA ATPase family.	CRE-RPN-11 protein.	0.995