(28 nodes) Mixed, incl. Transcription factor GATA, and Fork head domain conserved site1 network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-elt-7	CRE-ELT-7 protein. (219 aa)
	Cre-let-381	CRE-LET-381 protein. (369 aa)
	Cre-unc-120	CRE-UNC-120 protein. (320 aa)
	Cre-rnt-1	CRE-RNT-1 protein. (295 aa)
	Cre-end-1	CRE-END-1 protein. (238 aa)
	Cre-end-3	CRE-END-3 protein. (258 aa)
	Cre-elt-2	CRE-ELT-2 protein. (426 aa)
	CRE_17282	CBP/p300-type HAT domain-containing protein. (824 aa)
	CRE_22476	CBP/p300-type HAT domain-containing protein. (847 aa)
	Cre-prmt-1	CRE-PRMT-1 protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (348 aa)
	CRE_21244	Fork-head domain-containing protein. (408 aa)
	CRE_24951	Uncharacterized protein. (397 aa)
	CRE_31245	Fork-head domain-containing protein. (373 aa)
	CRE_31246	Fork-head domain-containing protein. (435 aa)
	Cre-elt-1	CRE-ELT-1 protein. (412 aa)
	CRE_19743	G_PROTEIN_RECEP_F1_2 domain-containing protein. (224 aa)
	CRE_19747	G_PROTEIN_RECEP_F1_2 domain-containing protein. (332 aa)
	CRE_21377	Uncharacterized protein. (698 aa)
	Cre-elt-6	CRE-ELT-6 protein. (389 aa)
	Cre-egl-18	CRE-EGL-18 protein. (419 aa)
	Cre-pes-1	CRE-PES-1 protein. (245 aa)
	CRE_14319	CBP/p300-type HAT domain-containing protein. (580 aa)
	Cre-bro-1	CRE-BRO-1 protein. (156 aa)
	CRE_24249	Fork-head domain-containing protein. (378 aa)
	CRE_08585	GATA-type domain-containing protein. (189 aa)
	CRE_15036	PHD-type domain-containing protein. (268 aa)
	CRE_22722	Uncharacterized protein. (580 aa)
	med4	GATA transcription factor MED4. (169 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_08585	CRE_14319	E3NIJ5	E3NEZ0	GATA-type domain-containing protein.	CBP/p300-type HAT domain-containing protein.	0.687
CRE_08585	CRE_15036	E3NIJ5	E3NK98	GATA-type domain-containing protein.	PHD-type domain-containing protein.	0.559
CRE_08585	CRE_17282	E3NIJ5	E3MAI8	GATA-type domain-containing protein.	CBP/p300-type HAT domain-containing protein.	0.687
CRE_08585	CRE_19743	E3NIJ5	E3MTJ9	GATA-type domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.618
CRE_08585	CRE_19747	E3NIJ5	E3MTK5	GATA-type domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.618
CRE_08585	CRE_21244	E3NIJ5	E3MF31	GATA-type domain-containing protein.	Fork-head domain-containing protein.	0.812
CRE_08585	CRE_21377	E3NIJ5	E3MUM5	GATA-type domain-containing protein.	Uncharacterized protein.	0.687
CRE_08585	CRE_22476	E3NIJ5	E3MDV6	GATA-type domain-containing protein.	CBP/p300-type HAT domain-containing protein.	0.687
CRE_08585	CRE_22722	E3NIJ5	E3NLA1	GATA-type domain-containing protein.	Uncharacterized protein.	0.687
CRE_08585	CRE_24249	E3NIJ5	E3NFT9	GATA-type domain-containing protein.	Fork-head domain-containing protein.	0.823
CRE_08585	CRE_24951	E3NIJ5	E3MHY4	GATA-type domain-containing protein.	Uncharacterized protein.	0.687
CRE_08585	CRE_31245	E3NIJ5	E3MLT2	GATA-type domain-containing protein.	Fork-head domain-containing protein.	0.889
CRE_08585	CRE_31246	E3NIJ5	E3MLT5	GATA-type domain-containing protein.	Fork-head domain-containing protein.	0.888
CRE_08585	Cre-bro-1	E3NIJ5	E3NFE7	GATA-type domain-containing protein.	CRE-BRO-1 protein.	0.705
CRE_08585	Cre-elt-1	E3NIJ5	E3MRA9	GATA-type domain-containing protein.	CRE-ELT-1 protein.	0.666
CRE_08585	Cre-elt-7	E3NIJ5	E3LK06	GATA-type domain-containing protein.	CRE-ELT-7 protein.	0.648
CRE_08585	Cre-end-3	E3NIJ5	E3M0M7	GATA-type domain-containing protein.	CRE-END-3 protein.	0.778
CRE_08585	Cre-let-381	E3NIJ5	E3LUY1	GATA-type domain-containing protein.	CRE-LET-381 protein.	0.895
CRE_08585	Cre-pes-1	E3NIJ5	E3NA05	GATA-type domain-containing protein.	CRE-PES-1 protein.	0.686
CRE_08585	Cre-prmt-1	E3NIJ5	E3MET6	GATA-type domain-containing protein.	CRE-PRMT-1 protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.704