(8 nodes) Mixed, incl. STAT protein, all-alpha domain, and Nuclear receptor coactivator activity network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_29635	Uncharacterized protein. (1716 aa)
	CRE_20864	CBP/p300-type HAT domain-containing protein. (845 aa)
	CRE_27767	CBP/p300-type HAT domain-containing protein. (147 aa)
	Cre-sta-1	Signal transducer and activator of transcription. (714 aa)
	CRE_23737	Uncharacterized protein. (542 aa)
	CRE_17606	Uncharacterized protein. (145 aa)
	CRE_25970	Zmiz1_N domain-containing protein. (199 aa)
	CRE_14412	SP-RING-type domain-containing protein. (618 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_14412	CRE_17606	E3NR15	E3NHA3	SP-RING-type domain-containing protein.	Uncharacterized protein.	0.525
CRE_14412	CRE_23737	E3NR15	E3NFV3	SP-RING-type domain-containing protein.	Uncharacterized protein.	0.836
CRE_14412	CRE_29635	E3NR15	E3LUX1	SP-RING-type domain-containing protein.	Uncharacterized protein.	0.525
CRE_14412	Cre-sta-1	E3NR15	E3NFV0	SP-RING-type domain-containing protein.	Signal transducer and activator of transcription.	0.836
CRE_17606	CRE_14412	E3NHA3	E3NR15	Uncharacterized protein.	SP-RING-type domain-containing protein.	0.525
CRE_17606	CRE_20864	E3NHA3	E3MV02	Uncharacterized protein.	CBP/p300-type HAT domain-containing protein.	0.656
CRE_17606	CRE_23737	E3NHA3	E3NFV3	Uncharacterized protein.	Uncharacterized protein.	0.483
CRE_17606	CRE_25970	E3NHA3	E3NMI9	Uncharacterized protein.	Zmiz1_N domain-containing protein.	0.525
CRE_17606	CRE_27767	E3NHA3	E3MXM9	Uncharacterized protein.	CBP/p300-type HAT domain-containing protein.	0.656
CRE_17606	Cre-sta-1	E3NHA3	E3NFV0	Uncharacterized protein.	Signal transducer and activator of transcription.	0.483
CRE_20864	CRE_17606	E3MV02	E3NHA3	CBP/p300-type HAT domain-containing protein.	Uncharacterized protein.	0.656
CRE_20864	CRE_23737	E3MV02	E3NFV3	CBP/p300-type HAT domain-containing protein.	Uncharacterized protein.	0.752
CRE_20864	CRE_29635	E3MV02	E3LUX1	CBP/p300-type HAT domain-containing protein.	Uncharacterized protein.	0.656
CRE_20864	Cre-sta-1	E3MV02	E3NFV0	CBP/p300-type HAT domain-containing protein.	Signal transducer and activator of transcription.	0.752
CRE_23737	CRE_14412	E3NFV3	E3NR15	Uncharacterized protein.	SP-RING-type domain-containing protein.	0.836
CRE_23737	CRE_17606	E3NFV3	E3NHA3	Uncharacterized protein.	Uncharacterized protein.	0.483
CRE_23737	CRE_20864	E3NFV3	E3MV02	Uncharacterized protein.	CBP/p300-type HAT domain-containing protein.	0.752
CRE_23737	CRE_25970	E3NFV3	E3NMI9	Uncharacterized protein.	Zmiz1_N domain-containing protein.	0.836
CRE_23737	CRE_27767	E3NFV3	E3MXM9	Uncharacterized protein.	CBP/p300-type HAT domain-containing protein.	0.752
CRE_23737	CRE_29635	E3NFV3	E3LUX1	Uncharacterized protein.	Uncharacterized protein.	0.483