(22 nodes) Mixed, incl. Myc-type, basic helix-loop-helix (bHLH) domain, and GATA zinc finger network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-ceh-14	CRE-CEH-14 protein. (409 aa)
	Cre-lin-32	CRE-LIN-32 protein. (147 aa)
	CRE_00191	Homeobox domain-containing protein. (228 aa)
	Cre-hlh-3	CRE-HLH-3 protein. (168 aa)
	Cre-hlh-15	CRE-HLH-15 protein. (89 aa)
	Cre-ldb-1	CRE-LDB-1 protein. (660 aa)
	Cre-alr-1	CRE-ALR-1 protein. (362 aa)
	Cre-hlh-14	CRE-HLH-14 protein. (175 aa)
	CRE_10917	Homeobox domain-containing protein. (227 aa)
	Cre-hlh-19	CRE-HLH-19 protein. (112 aa)
	Cre-hlh-10	CRE-HLH-10 protein. (211 aa)
	CRE_04073	LisH domain-containing protein. (461 aa)
	CRE_16205	WSN domain-containing protein. (751 aa)
	CRE_23621	Uncharacterized protein. (471 aa)
	Cre-hnd-1	CRE-HND-1 protein. (221 aa)
	CRE_03379	GATA-type domain-containing protein. (162 aa)
	CRE_19959	Homeobox domain-containing protein. (261 aa)
	Cre-ttx-3	CRE-TTX-3 protein. (460 aa)
	Cre-lim-7	CRE-LIM-7 protein. (462 aa)
	Cre-hlh-2	CRE-HLH-2 protein. (394 aa)
	med7	GATA transcription factor MED7. (162 aa)
	med3	GATA transcription factor MED3. (192 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00191	CRE_03379	E3LDN5	E3N645	Homeobox domain-containing protein.	GATA-type domain-containing protein.	0.441
CRE_00191	CRE_04073	E3LDN5	E3MMS3	Homeobox domain-containing protein.	LisH domain-containing protein.	0.475
CRE_00191	Cre-alr-1	E3LDN5	E3M2P7	Homeobox domain-containing protein.	CRE-ALR-1 protein.	0.883
CRE_00191	Cre-ceh-14	E3LDN5	E3LCT8	Homeobox domain-containing protein.	CRE-CEH-14 protein.	0.805
CRE_00191	Cre-hlh-10	E3LDN5	E3MD89	Homeobox domain-containing protein.	CRE-HLH-10 protein.	0.725
CRE_00191	Cre-hlh-14	E3LDN5	E3M4V3	Homeobox domain-containing protein.	CRE-HLH-14 protein.	0.672
CRE_00191	Cre-hlh-15	E3LDN5	E3M2L3	Homeobox domain-containing protein.	CRE-HLH-15 protein.	0.654
CRE_00191	Cre-hlh-19	E3LDN5	E3MAA8	Homeobox domain-containing protein.	CRE-HLH-19 protein.	0.654
CRE_00191	Cre-hlh-2	E3LDN5	E3NH49	Homeobox domain-containing protein.	CRE-HLH-2 protein.	0.771
CRE_00191	Cre-hlh-3	E3LDN5	E3LG64	Homeobox domain-containing protein.	CRE-HLH-3 protein.	0.672
CRE_00191	Cre-hnd-1	E3LDN5	E3MZ99	Homeobox domain-containing protein.	CRE-HND-1 protein.	0.654
CRE_00191	Cre-ldb-1	E3LDN5	E3M2M2	Homeobox domain-containing protein.	CRE-LDB-1 protein.	0.867
CRE_00191	med3	E3LDN5	Q2PZG9	Homeobox domain-containing protein.	GATA transcription factor MED3.	0.441
CRE_00191	med7	E3LDN5	Q2PZG5	Homeobox domain-containing protein.	GATA transcription factor MED7.	0.441
CRE_03379	CRE_00191	E3N645	E3LDN5	GATA-type domain-containing protein.	Homeobox domain-containing protein.	0.441
CRE_03379	CRE_10917	E3N645	E3M5I3	GATA-type domain-containing protein.	Homeobox domain-containing protein.	0.441
CRE_03379	CRE_16205	E3N645	E3MSK5	GATA-type domain-containing protein.	WSN domain-containing protein.	0.441
CRE_03379	CRE_19959	E3N645	E3N8D6	GATA-type domain-containing protein.	Homeobox domain-containing protein.	0.441
CRE_03379	CRE_23621	E3N645	E3MVW4	GATA-type domain-containing protein.	Uncharacterized protein.	0.441
CRE_03379	Cre-alr-1	E3N645	E3M2P7	GATA-type domain-containing protein.	CRE-ALR-1 protein.	0.441