(11 nodes) Type I hemidesmosome assembly, and Intermediate filament-based process network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_07539	Tetraspanin. (253 aa)
	CRE_23331	RING-type domain-containing protein. (396 aa)
	CRE_04184	Uncharacterized protein. (634 aa)
	CRE_04231	FBA_2 domain-containing protein. (317 aa)
	CRE_04232	FBA_2 domain-containing protein. (285 aa)
	CRE_09763	Calponin-homology (CH) domain-containing protein. (184 aa)
	CRE_01394	Uncharacterized protein. (1405 aa)
	CRE_01395	Uncharacterized protein. (1666 aa)
	CRE_19537	Uncharacterized protein. (306 aa)
	CRE_17674	Uncharacterized protein. (1496 aa)
	CRE_16563	Uncharacterized protein. (424 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01394	CRE_04184	E3NG13	E3MYV4	Uncharacterized protein.	Uncharacterized protein.	0.608
CRE_01394	CRE_04231	E3NG13	E3MYV6	Uncharacterized protein.	FBA_2 domain-containing protein.	0.608
CRE_01394	CRE_04232	E3NG13	E3MYV7	Uncharacterized protein.	FBA_2 domain-containing protein.	0.608
CRE_01394	CRE_07539	E3NG13	E3M2C7	Uncharacterized protein.	Tetraspanin.	0.625
CRE_01394	CRE_09763	E3NG13	E3N9W2	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.608
CRE_01394	CRE_19537	E3NG13	E3NJ80	Uncharacterized protein.	Uncharacterized protein.	0.608
CRE_01395	CRE_04184	E3NG14	E3MYV4	Uncharacterized protein.	Uncharacterized protein.	0.608
CRE_01395	CRE_04231	E3NG14	E3MYV6	Uncharacterized protein.	FBA_2 domain-containing protein.	0.608
CRE_01395	CRE_04232	E3NG14	E3MYV7	Uncharacterized protein.	FBA_2 domain-containing protein.	0.608
CRE_01395	CRE_07539	E3NG14	E3M2C7	Uncharacterized protein.	Tetraspanin.	0.625
CRE_01395	CRE_09763	E3NG14	E3N9W2	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.608
CRE_01395	CRE_19537	E3NG14	E3NJ80	Uncharacterized protein.	Uncharacterized protein.	0.608
CRE_04184	CRE_01394	E3MYV4	E3NG13	Uncharacterized protein.	Uncharacterized protein.	0.608
CRE_04184	CRE_01395	E3MYV4	E3NG14	Uncharacterized protein.	Uncharacterized protein.	0.608
CRE_04184	CRE_07539	E3MYV4	E3M2C7	Uncharacterized protein.	Tetraspanin.	0.606
CRE_04184	CRE_16563	E3MYV4	E3NTW7	Uncharacterized protein.	Uncharacterized protein.	0.608
CRE_04184	CRE_17674	E3MYV4	E3NPL4	Uncharacterized protein.	Uncharacterized protein.	0.608
CRE_04184	CRE_23331	E3MYV4	E3MGW9	Uncharacterized protein.	RING-type domain-containing protein.	0.524
CRE_04231	CRE_01394	E3MYV6	E3NG13	FBA_2 domain-containing protein.	Uncharacterized protein.	0.608
CRE_04231	CRE_01395	E3MYV6	E3NG14	FBA_2 domain-containing protein.	Uncharacterized protein.	0.608