35 items (Caenorhabditis remanei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_20353	Uncharacterized protein. (507 aa)
	CRE_28272	AAA domain-containing protein; Belongs to the AAA ATPase family. (409 aa)
	CRE_28562	Uncharacterized protein; Belongs to the AAA ATPase family. (309 aa)
	Cre-rpn-10	CRE-RPN-10 protein. (350 aa)
	Cre-rpt-5	CRE-RPT-5 protein; Belongs to the AAA ATPase family. (430 aa)
	CRE_09394	AAA domain-containing protein; Belongs to the AAA ATPase family. (416 aa)
	CRE_02019	AAA domain-containing protein; Belongs to the AAA ATPase family. (438 aa)
	Cre-rpn-9	CRE-RPN-9 protein. (390 aa)
	Cre-rpn-12	CRE-RPN-12 protein. (250 aa)
	Cre-rpn-11	CRE-RPN-11 protein. (312 aa)
	Cre-rpn-3	CRE-RPN-3 protein. (506 aa)
	Cre-rpn-6	CRE-RPN-6 protein. (420 aa)
	CRE_14579	AAA domain-containing protein; Belongs to the AAA ATPase family. (404 aa)
	CRE_14692	Uncharacterized protein. (89 aa)
	CRE_13301	Uncharacterized protein. (292 aa)
	CRE_11090	PCI domain-containing protein. (489 aa)
	CRE_06288	MPN domain-containing protein. (323 aa)
	CRE_03184	AAA domain-containing protein; Belongs to the AAA ATPase family. (443 aa)
	CRE_03159	Uncharacterized protein. (208 aa)
	CRE_03157	RPN13_C domain-containing protein. (387 aa)
	Cre-rpn-2	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family. (978 aa)
	Cre-rpt-2	CRE-RPT-2 protein; Belongs to the AAA ATPase family. (443 aa)
	CRE_25584	MPN domain-containing protein. (319 aa)
	Cre-rpt-1	CRE-RPT-1 protein; Belongs to the AAA ATPase family. (435 aa)
	CRE_23600	AAA domain-containing protein; Belongs to the AAA ATPase family. (329 aa)
	CRE_01130	Uncharacterized protein. (311 aa)
	Cre-rpn-5	CRE-RPN-5 protein. (507 aa)
	CRE_12205	PCI domain-containing protein. (472 aa)
	Cre-rpt-4	CRE-RPT-4 protein; Belongs to the AAA ATPase family. (492 aa)
	Cre-rpn-1	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family. (989 aa)
	Cre-rpn-7	CRE-RPN-7 protein. (409 aa)
	CRE_25761	PCI domain-containing protein. (372 aa)
	Cre-rpt-6	CRE-RPT-6 protein; Belongs to the AAA ATPase family. (408 aa)
	Cre-dss-1	CRE-DSS-1 protein. (86 aa)
	CRE_25974	AAA_lid_3 domain-containing protein. (114 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01130	CRE_02019	E3MWL3	E3LGV3	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.981
CRE_01130	CRE_03184	E3MWL3	E3LX06	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.978
CRE_01130	CRE_06288	E3MWL3	E3M0Y8	Uncharacterized protein.	MPN domain-containing protein.	0.946
CRE_01130	CRE_09394	E3MWL3	E3LIK9	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.978
CRE_01130	CRE_11090	E3MWL3	E3M5G9	Uncharacterized protein.	PCI domain-containing protein.	0.965
CRE_01130	CRE_12205	E3MWL3	E3N091	Uncharacterized protein.	PCI domain-containing protein.	0.964
CRE_01130	CRE_14579	E3MWL3	E3M9M3	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.924
CRE_01130	CRE_14692	E3MWL3	E3M9L9	Uncharacterized protein.	Uncharacterized protein.	0.924
CRE_01130	CRE_20353	E3MWL3	E3MCX3	Uncharacterized protein.	Uncharacterized protein.	0.974
CRE_01130	CRE_23600	E3MWL3	E3MVR7	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.924
CRE_01130	CRE_25584	E3MWL3	E3LSF4	Uncharacterized protein.	MPN domain-containing protein.	0.946
CRE_01130	CRE_25761	E3MWL3	E3N5P8	Uncharacterized protein.	PCI domain-containing protein.	0.969
CRE_01130	CRE_25974	E3MWL3	E3NMZ7	Uncharacterized protein.	AAA_lid_3 domain-containing protein.	0.931
CRE_01130	CRE_28272	E3MWL3	E3LN27	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.931
CRE_01130	CRE_28562	E3MWL3	E3LN24	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.931
CRE_01130	Cre-dss-1	E3MWL3	E3NGB8	Uncharacterized protein.	CRE-DSS-1 protein.	0.896
CRE_01130	Cre-rpn-1	E3MWL3	E3N3U9	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.983
CRE_01130	Cre-rpn-10	E3MWL3	E3LMP7	Uncharacterized protein.	CRE-RPN-10 protein.	0.991
CRE_01130	Cre-rpn-11	E3MWL3	E3MQH8	Uncharacterized protein.	CRE-RPN-11 protein.	0.946
CRE_01130	Cre-rpn-12	E3MWL3	E3LF40	Uncharacterized protein.	CRE-RPN-12 protein.	0.986