(37 nodes) Motor neuron axon guidance network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_30190	Uncharacterized protein. (827 aa)
	Cre-ddr-2	CRE-DDR-2 protein. (767 aa)
	Cre-unc-6	CRE-UNC-6 protein. (612 aa)
	Cre-pak-1	Non-specific serine/threonine protein kinase. (570 aa)
	Cre-ddr-1	CRE-DDR-1 protein. (768 aa)
	Cre-max-2	Non-specific serine/threonine protein kinase. (637 aa)
	Cre-unc-53	CRE-UNC-53 protein. (1671 aa)
	Cre-ptp-3	CRE-PTP-3 protein. (2284 aa)
	CRE_08658	Uncharacterized protein. (407 aa)
	CRE_08659	Uncharacterized protein. (400 aa)
	CRE_08660	Uncharacterized protein. (308 aa)
	CRE_08661	Uncharacterized protein. (393 aa)
	Cre-unc-34	CRE-UNC-34 protein. (463 aa)
	CRE_28206	Uncharacterized protein. (566 aa)
	Cre-wve-1	CRE-WVE-1 protein. (501 aa)
	Cre-spon-1	CRE-SPON-1 protein. (831 aa)
	CRE_25187	Uncharacterized protein. (529 aa)
	CRE_25190	Uncharacterized protein. (195 aa)
	Cre-ten-1	CRE-TEN-1 protein. (2623 aa)
	Cre-unc-40	CRE-UNC-40 protein. (1432 aa)
	CRE_03656	Uncharacterized protein. (496 aa)
	CRE_05397	Uncharacterized protein. (3120 aa)
	Cre-mig-2	CRE-MIG-2 protein. (195 aa)
	Cre-eak-6	CRE-EAK-6 protein. (392 aa)
	Cre-rig-6	CRE-RIG-6 protein. (1216 aa)
	Cre-unc-73	CRE-UNC-73 protein. (2483 aa)
	Cre-rack-1	CRE-RACK-1 protein. (325 aa)
	Cre-crp-1	CRE-CRP-1 protein. (187 aa)
	Cre-unc-5	CRE-UNC-5 protein. (920 aa)
	Cre-unc-33	CRE-UNC-33 protein. (907 aa)
	CRE_20516	Uncharacterized protein. (414 aa)
	CRE_13711	Uncharacterized protein. (469 aa)
	Cre-plx-2	CRE-PLX-2 protein. (1817 aa)
	Cre-unc-129	CRE-UNC-129 protein. (410 aa)
	CRE_13857	Amidohydro-rel domain-containing protein. (276 aa)
	CRE_30335	Death domain-containing protein. (373 aa)
	CRE_21702	Uncharacterized protein. (361 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_03656	Cre-plx-2	E3LXH9	E3NEQ6	Uncharacterized protein.	CRE-PLX-2 protein.	0.549
CRE_03656	Cre-ptp-3	E3LXH9	E3LFH4	Uncharacterized protein.	CRE-PTP-3 protein.	0.606
CRE_03656	Cre-rig-6	E3LXH9	E3M476	Uncharacterized protein.	CRE-RIG-6 protein.	0.494
CRE_13711	Cre-plx-2	E3NBT6	E3NEQ6	Uncharacterized protein.	CRE-PLX-2 protein.	0.549
CRE_13711	Cre-rig-6	E3NBT6	E3M476	Uncharacterized protein.	CRE-RIG-6 protein.	0.428
CRE_13857	CRE_30335	E3NUT4	E3NUY5	Amidohydro-rel domain-containing protein.	Death domain-containing protein.	0.450
CRE_13857	Cre-mig-2	E3NUT4	E3M255	Amidohydro-rel domain-containing protein.	CRE-MIG-2 protein.	0.453
CRE_13857	Cre-plx-2	E3NUT4	E3NEQ6	Amidohydro-rel domain-containing protein.	CRE-PLX-2 protein.	0.685
CRE_13857	Cre-unc-34	E3NUT4	E3LKP2	Amidohydro-rel domain-containing protein.	CRE-UNC-34 protein.	0.598
CRE_13857	Cre-unc-5	E3NUT4	E3MR05	Amidohydro-rel domain-containing protein.	CRE-UNC-5 protein.	0.450
CRE_13857	Cre-unc-6	E3NUT4	E3LD86	Amidohydro-rel domain-containing protein.	CRE-UNC-6 protein.	0.551
CRE_13857	Cre-unc-73	E3NUT4	E3MGG2	Amidohydro-rel domain-containing protein.	CRE-UNC-73 protein.	0.612
CRE_20516	Cre-plx-2	E3N898	E3NEQ6	Uncharacterized protein.	CRE-PLX-2 protein.	0.549
CRE_20516	Cre-ptp-3	E3N898	E3LFH4	Uncharacterized protein.	CRE-PTP-3 protein.	0.606
CRE_20516	Cre-rig-6	E3N898	E3M476	Uncharacterized protein.	CRE-RIG-6 protein.	0.494
CRE_21702	Cre-plx-2	E3NVB9	E3NEQ6	Uncharacterized protein.	CRE-PLX-2 protein.	0.549
CRE_21702	Cre-ptp-3	E3NVB9	E3LFH4	Uncharacterized protein.	CRE-PTP-3 protein.	0.606
CRE_21702	Cre-rig-6	E3NVB9	E3M476	Uncharacterized protein.	CRE-RIG-6 protein.	0.494
CRE_25187	Cre-plx-2	E3LRS9	E3NEQ6	Uncharacterized protein.	CRE-PLX-2 protein.	0.549
CRE_25187	Cre-rig-6	E3LRS9	E3M476	Uncharacterized protein.	CRE-RIG-6 protein.	0.428