14 items (Caenorhabditis remanei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-dss-1	CRE-DSS-1 protein. (86 aa)
	CRE_12205	PCI domain-containing protein. (472 aa)
	Cre-rpn-5	CRE-RPN-5 protein. (507 aa)
	CRE_01130	Uncharacterized protein. (311 aa)
	Cre-rpn-11	CRE-RPN-11 protein. (312 aa)
	Cre-rpn-3	CRE-RPN-3 protein. (506 aa)
	Cre-rpn-6	CRE-RPN-6 protein. (420 aa)
	CRE_13301	Uncharacterized protein. (292 aa)
	CRE_11090	PCI domain-containing protein. (489 aa)
	CRE_06288	MPN domain-containing protein. (323 aa)
	CRE_03157	RPN13_C domain-containing protein. (387 aa)
	CRE_25584	MPN domain-containing protein. (319 aa)
	Cre-rpn-9	CRE-RPN-9 protein. (390 aa)
	Cre-rpn-12	CRE-RPN-12 protein. (250 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01130	CRE_06288	E3MWL3	E3M0Y8	Uncharacterized protein.	MPN domain-containing protein.	0.946
CRE_01130	CRE_11090	E3MWL3	E3M5G9	Uncharacterized protein.	PCI domain-containing protein.	0.965
CRE_01130	CRE_12205	E3MWL3	E3N091	Uncharacterized protein.	PCI domain-containing protein.	0.964
CRE_01130	CRE_25584	E3MWL3	E3LSF4	Uncharacterized protein.	MPN domain-containing protein.	0.946
CRE_01130	Cre-dss-1	E3MWL3	E3NGB8	Uncharacterized protein.	CRE-DSS-1 protein.	0.896
CRE_01130	Cre-rpn-11	E3MWL3	E3MQH8	Uncharacterized protein.	CRE-RPN-11 protein.	0.946
CRE_01130	Cre-rpn-12	E3MWL3	E3LF40	Uncharacterized protein.	CRE-RPN-12 protein.	0.986
CRE_01130	Cre-rpn-3	E3MWL3	E3MI14	Uncharacterized protein.	CRE-RPN-3 protein.	0.991
CRE_01130	Cre-rpn-5	E3MWL3	E3MXE6	Uncharacterized protein.	CRE-RPN-5 protein.	0.965
CRE_01130	Cre-rpn-6	E3MWL3	E3MCI4	Uncharacterized protein.	CRE-RPN-6 protein.	0.964
CRE_01130	Cre-rpn-9	E3MWL3	E3LFC8	Uncharacterized protein.	CRE-RPN-9 protein.	0.986
CRE_03157	CRE_06288	E3LWV1	E3M0Y8	RPN13_C domain-containing protein.	MPN domain-containing protein.	0.995
CRE_03157	CRE_11090	E3LWV1	E3M5G9	RPN13_C domain-containing protein.	PCI domain-containing protein.	0.990
CRE_03157	CRE_12205	E3LWV1	E3N091	RPN13_C domain-containing protein.	PCI domain-containing protein.	0.986
CRE_03157	CRE_25584	E3LWV1	E3LSF4	RPN13_C domain-containing protein.	MPN domain-containing protein.	0.983
CRE_03157	Cre-dss-1	E3LWV1	E3NGB8	RPN13_C domain-containing protein.	CRE-DSS-1 protein.	0.965
CRE_03157	Cre-rpn-11	E3LWV1	E3MQH8	RPN13_C domain-containing protein.	CRE-RPN-11 protein.	0.995
CRE_03157	Cre-rpn-12	E3LWV1	E3LF40	RPN13_C domain-containing protein.	CRE-RPN-12 protein.	0.998
CRE_03157	Cre-rpn-3	E3LWV1	E3MI14	RPN13_C domain-containing protein.	CRE-RPN-3 protein.	0.998
CRE_03157	Cre-rpn-5	E3LWV1	E3MXE6	RPN13_C domain-containing protein.	CRE-RPN-5 protein.	0.996