(17 nodes) Positive regulation of necrotic cell death network (Caenorhabditis remanei)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-lgg-1	Protein lgg. (123 aa)
	Cre-rme-1	CRE-RME-1 protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (570 aa)
	Cre-unc-57	CRE-UNC-57 protein. (402 aa)
	CRE_10859	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (317 aa)
	Cre-unc-26	CRE-UNC-26 protein. (1121 aa)
	Cre-dyn-1	CRE-DYN-1 protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (879 aa)
	Cre-unc-11	CRE-UNC-11 protein. (641 aa)
	Cre-unc-116	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (839 aa)
	Cre-clp-1	CRE-CLP-1 protein; Belongs to the peptidase C2 family. (789 aa)
	CRE_29048	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (810 aa)
	CRE_13811	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (333 aa)
	CRE_11600	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (506 aa)
	CRE_12429	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (317 aa)
	Cre-dpy-23	CRE-DPY-23 protein; Belongs to the adaptor complexes medium subunit family. (435 aa)
	CRE_28132	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (328 aa)
	Cre-unc-104	CRE-UNC-104 protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1633 aa)
	Cre-snt-1	CRE-SNT-1 protein. (442 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_11600	Cre-dpy-23	E3NRK8	E3LEH6	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	CRE-DPY-23 protein; Belongs to the adaptor complexes medium subunit family.	0.768
CRE_11600	Cre-lgg-1	E3NRK8	E3LR71	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Protein lgg.	0.742
CRE_11600	Cre-rme-1	E3NRK8	E3LUN5	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	CRE-RME-1 protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.537
CRE_11600	Cre-snt-1	E3NRK8	E3LQT9	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	CRE-SNT-1 protein.	0.503
CRE_11600	Cre-unc-11	E3NRK8	E3MG95	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	CRE-UNC-11 protein.	0.725
CRE_11600	Cre-unc-116	E3NRK8	E3MI93	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.537
CRE_11600	Cre-unc-26	E3NRK8	E3M6A4	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	CRE-UNC-26 protein.	0.714
CRE_11600	Cre-unc-57	E3NRK8	E3LXK8	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	CRE-UNC-57 protein.	0.935
CRE_13811	Cre-dpy-23	E3NNL9	E3LEH6	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	CRE-DPY-23 protein; Belongs to the adaptor complexes medium subunit family.	0.768
CRE_13811	Cre-lgg-1	E3NNL9	E3LR71	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Protein lgg.	0.742
CRE_13811	Cre-rme-1	E3NNL9	E3LUN5	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	CRE-RME-1 protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.537
CRE_13811	Cre-snt-1	E3NNL9	E3LQT9	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	CRE-SNT-1 protein.	0.503
CRE_13811	Cre-unc-11	E3NNL9	E3MG95	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	CRE-UNC-11 protein.	0.725
CRE_13811	Cre-unc-116	E3NNL9	E3MI93	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.537
CRE_13811	Cre-unc-26	E3NNL9	E3M6A4	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	CRE-UNC-26 protein.	0.714
CRE_13811	Cre-unc-57	E3NNL9	E3LXK8	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	CRE-UNC-57 protein.	0.935
CRE_29048	Cre-dpy-23	E3NA72	E3LEH6	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	CRE-DPY-23 protein; Belongs to the adaptor complexes medium subunit family.	0.768
CRE_29048	Cre-lgg-1	E3NA72	E3LR71	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Protein lgg.	0.742
CRE_29048	Cre-rme-1	E3NA72	E3LUN5	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	CRE-RME-1 protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.537
CRE_29048	Cre-snt-1	E3NA72	E3LQT9	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	CRE-SNT-1 protein.	0.503