(24 nodes) Postsynaptic density network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-stg-1	CRE-STG-1 protein. (213 aa)
	CRE_20160	AH domain-containing protein. (89 aa)
	CRE_06257	AH domain-containing protein. (358 aa)
	CRE_19608	AH domain-containing protein. (272 aa)
	CRE_06241	AH domain-containing protein. (176 aa)
	CRE_24890	G_PROTEIN_RECEP_F3_4 domain-containing protein. (1212 aa)
	CRE_30528	PDZ domain-containing protein. (246 aa)
	CRE_12292	Uncharacterized protein. (440 aa)
	Cre-lgc-55	CRE-LGC-55 protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (538 aa)
	CRE_24051	Uncharacterized protein. (1053 aa)
	CRE_19180	Uncharacterized protein. (1146 aa)
	Cre-nab-1	CRE-NAB-1 protein. (718 aa)
	Cre-glr-1	CRE-GLR-1 protein. (965 aa)
	CRE_10188	G_PROTEIN_RECEP_F3_4 domain-containing protein; Belongs to the G-protein coupled receptor 3 family. (1398 aa)
	Cre-nsy-1	CRE-NSY-1 protein. (1506 aa)
	CRE_04852	Uncharacterized protein. (683 aa)
	Cre-efk-1	CRE-EFK-1 protein. (855 aa)
	Cre-mgl-2	CRE-MGL-2 protein; Belongs to the bZIP family. (1287 aa)
	Cre-add-2	CRE-ADD-2 protein. (613 aa)
	Cre-let-413	CRE-LET-413 protein. (772 aa)
	Cre-kel-8	CRE-KEL-8 protein. (541 aa)
	CRE_18782	Uncharacterized protein. (135 aa)
	Cre-shn-1	CRE-SHN-1 protein. (1133 aa)
	Cre-add-1	CRE-ADD-1 protein. (687 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_04852	Cre-nab-1	E3LYH7	E3MGI3	Uncharacterized protein.	CRE-NAB-1 protein.	0.507
CRE_04852	Cre-shn-1	E3LYH7	E3LFA1	Uncharacterized protein.	CRE-SHN-1 protein.	0.405
CRE_06241	CRE_20160	E3NT11	E3NV89	AH domain-containing protein.	AH domain-containing protein.	0.527
CRE_06241	CRE_30528	E3NT11	E3NK22	AH domain-containing protein.	PDZ domain-containing protein.	0.571
CRE_06241	Cre-glr-1	E3NT11	E3MD27	AH domain-containing protein.	CRE-GLR-1 protein.	0.849
CRE_06241	Cre-let-413	E3NT11	E3LNW6	AH domain-containing protein.	CRE-LET-413 protein.	0.551
CRE_06257	CRE_30528	E3NUJ9	E3NK22	AH domain-containing protein.	PDZ domain-containing protein.	0.571
CRE_06257	Cre-glr-1	E3NUJ9	E3MD27	AH domain-containing protein.	CRE-GLR-1 protein.	0.849
CRE_06257	Cre-let-413	E3NUJ9	E3LNW6	AH domain-containing protein.	CRE-LET-413 protein.	0.551
CRE_10188	Cre-shn-1	E3M6T2	E3LFA1	G_PROTEIN_RECEP_F3_4 domain-containing protein; Belongs to the G-protein coupled receptor 3 family.	CRE-SHN-1 protein.	0.505
CRE_12292	CRE_30528	E3NEP2	E3NK22	Uncharacterized protein.	PDZ domain-containing protein.	0.571
CRE_12292	Cre-glr-1	E3NEP2	E3MD27	Uncharacterized protein.	CRE-GLR-1 protein.	0.849
CRE_12292	Cre-let-413	E3NEP2	E3LNW6	Uncharacterized protein.	CRE-LET-413 protein.	0.551
CRE_18782	Cre-glr-1	E3LKA4	E3MD27	Uncharacterized protein.	CRE-GLR-1 protein.	0.573
CRE_19180	Cre-nab-1	E3MJR7	E3MGI3	Uncharacterized protein.	CRE-NAB-1 protein.	0.421
CRE_19608	CRE_30528	E3NTQ4	E3NK22	AH domain-containing protein.	PDZ domain-containing protein.	0.571
CRE_19608	Cre-glr-1	E3NTQ4	E3MD27	AH domain-containing protein.	CRE-GLR-1 protein.	0.849
CRE_19608	Cre-let-413	E3NTQ4	E3LNW6	AH domain-containing protein.	CRE-LET-413 protein.	0.551
CRE_20160	CRE_06241	E3NV89	E3NT11	AH domain-containing protein.	AH domain-containing protein.	0.527
CRE_20160	CRE_30528	E3NV89	E3NK22	AH domain-containing protein.	PDZ domain-containing protein.	0.571