(10 nodes) Skeletal myofibril assembly network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-rho-1	CRE-RHO-1 protein. (192 aa)
	Cre-unc-15	CRE-UNC-15 protein. (872 aa)
	Cre-pat-10	CRE-PAT-10 protein. (200 aa)
	CRE_24008	Uncharacterized protein. (809 aa)
	Cre-unc-89	CRE-UNC-89 protein. (4709 aa)
	Cre-unc-54	CRE-UNC-54 protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1981 aa)
	Cre-unc-60	CRE-UNC-60 protein; Belongs to the actin-binding proteins ADF family. (293 aa)
	Cre-unc-78	CRE-UNC-78 protein. (644 aa)
	CRE_15063	Uncharacterized protein. (184 aa)
	CRE_03486	Uncharacterized protein. (207 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_03486	CRE_24008	E3NIA0	E3MGF9	Uncharacterized protein.	Uncharacterized protein.	0.953
CRE_03486	Cre-pat-10	E3NIA0	E3MX54	Uncharacterized protein.	CRE-PAT-10 protein.	0.670
CRE_03486	Cre-unc-15	E3NIA0	E3N437	Uncharacterized protein.	CRE-UNC-15 protein.	0.682
CRE_03486	Cre-unc-54	E3NIA0	E3MFC9	Uncharacterized protein.	CRE-UNC-54 protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.682
CRE_03486	Cre-unc-60	E3NIA0	E3LZY0	Uncharacterized protein.	CRE-UNC-60 protein; Belongs to the actin-binding proteins ADF family.	0.639
CRE_03486	Cre-unc-89	E3NIA0	E3MGF8	Uncharacterized protein.	CRE-UNC-89 protein.	0.953
CRE_15063	CRE_24008	E3NMU6	E3MGF9	Uncharacterized protein.	Uncharacterized protein.	0.953
CRE_15063	Cre-pat-10	E3NMU6	E3MX54	Uncharacterized protein.	CRE-PAT-10 protein.	0.670
CRE_15063	Cre-unc-15	E3NMU6	E3N437	Uncharacterized protein.	CRE-UNC-15 protein.	0.682
CRE_15063	Cre-unc-54	E3NMU6	E3MFC9	Uncharacterized protein.	CRE-UNC-54 protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.682
CRE_15063	Cre-unc-60	E3NMU6	E3LZY0	Uncharacterized protein.	CRE-UNC-60 protein; Belongs to the actin-binding proteins ADF family.	0.639
CRE_15063	Cre-unc-89	E3NMU6	E3MGF8	Uncharacterized protein.	CRE-UNC-89 protein.	0.953
CRE_24008	CRE_03486	E3MGF9	E3NIA0	Uncharacterized protein.	Uncharacterized protein.	0.953
CRE_24008	CRE_15063	E3MGF9	E3NMU6	Uncharacterized protein.	Uncharacterized protein.	0.953
CRE_24008	Cre-pat-10	E3MGF9	E3MX54	Uncharacterized protein.	CRE-PAT-10 protein.	0.808
CRE_24008	Cre-rho-1	E3MGF9	E3NH51	Uncharacterized protein.	CRE-RHO-1 protein.	0.953
CRE_24008	Cre-unc-15	E3MGF9	E3N437	Uncharacterized protein.	CRE-UNC-15 protein.	0.710
CRE_24008	Cre-unc-54	E3MGF9	E3MFC9	Uncharacterized protein.	CRE-UNC-54 protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.627
CRE_24008	Cre-unc-60	E3MGF9	E3LZY0	Uncharacterized protein.	CRE-UNC-60 protein; Belongs to the actin-binding proteins ADF family.	0.526
CRE_24008	Cre-unc-89	E3MGF9	E3MGF8	Uncharacterized protein.	CRE-UNC-89 protein.	0.418