(18 nodes) Cholesterol binding network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-tag-130	CRE-TAG-130 protein. (746 aa)
	Cre-sto-1	CRE-STO-1 protein. (334 aa)
	Cre-mec-2	CRE-MEC-2 protein. (1293 aa)
	Cre-sto-2	CRE-STO-2 protein. (320 aa)
	Cre-ncr-1	CRE-NCR-1 protein. (1382 aa)
	CRE_01805	Uncharacterized protein. (720 aa)
	CRE_02204	Uncharacterized protein. (108 aa)
	CRE_02205	Uncharacterized protein. (750 aa)
	CRE_25408	Uncharacterized protein. (322 aa)
	Cre-ncr-2	CRE-NCR-2 protein. (963 aa)
	Cre-sto-6	CRE-STO-6 protein. (300 aa)
	Cre-sto-4	CRE-STO-4 protein. (281 aa)
	Cre-grd-1	CRE-GRD-1 protein. (1177 aa)
	CRE_07306	Uncharacterized protein. (895 aa)
	Cre-obr-3	CRE-OBR-3 protein. (772 aa)
	CRE_15509	PHB domain-containing protein. (317 aa)
	CRE_29078	Uncharacterized protein. (742 aa)
	CRE_09648	Uncharacterized protein. (229 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_15509	Cre-sto-6	E3MT10	E3M267	PHB domain-containing protein.	CRE-STO-6 protein.	0.689
CRE_25408	Cre-ncr-2	E3LT06	E3LT08	Uncharacterized protein.	CRE-NCR-2 protein.	0.577
CRE_25408	Cre-obr-3	E3LT06	E3ME38	Uncharacterized protein.	CRE-OBR-3 protein.	0.706
Cre-mec-2	Cre-sto-4	E3LDX9	E3M271	CRE-MEC-2 protein.	CRE-STO-4 protein.	0.456
Cre-mec-2	Cre-sto-6	E3LDX9	E3M267	CRE-MEC-2 protein.	CRE-STO-6 protein.	0.458
Cre-ncr-1	Cre-obr-3	E3LEG6	E3ME38	CRE-NCR-1 protein.	CRE-OBR-3 protein.	0.721
Cre-ncr-1	Cre-tag-130	E3LEG6	E3NDW8	CRE-NCR-1 protein.	CRE-TAG-130 protein.	0.536
Cre-ncr-2	CRE_25408	E3LT08	E3LT06	CRE-NCR-2 protein.	Uncharacterized protein.	0.577
Cre-ncr-2	Cre-obr-3	E3LT08	E3ME38	CRE-NCR-2 protein.	CRE-OBR-3 protein.	0.706
Cre-obr-3	CRE_25408	E3ME38	E3LT06	CRE-OBR-3 protein.	Uncharacterized protein.	0.706
Cre-obr-3	Cre-ncr-1	E3ME38	E3LEG6	CRE-OBR-3 protein.	CRE-NCR-1 protein.	0.721
Cre-obr-3	Cre-ncr-2	E3ME38	E3LT08	CRE-OBR-3 protein.	CRE-NCR-2 protein.	0.706
Cre-sto-4	Cre-mec-2	E3M271	E3LDX9	CRE-STO-4 protein.	CRE-MEC-2 protein.	0.456
Cre-sto-4	Cre-sto-6	E3M271	E3M267	CRE-STO-4 protein.	CRE-STO-6 protein.	0.457
Cre-sto-6	CRE_15509	E3M267	E3MT10	CRE-STO-6 protein.	PHB domain-containing protein.	0.689
Cre-sto-6	Cre-mec-2	E3M267	E3LDX9	CRE-STO-6 protein.	CRE-MEC-2 protein.	0.458
Cre-sto-6	Cre-sto-4	E3M267	E3M271	CRE-STO-6 protein.	CRE-STO-4 protein.	0.457
Cre-tag-130	Cre-ncr-1	E3NDW8	E3LEG6	CRE-TAG-130 protein.	CRE-NCR-1 protein.	0.536