(19 nodes) Somatic sex determination network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_04678	Uncharacterized protein. (1293 aa)
	Cre-fem-3	CRE-FEM-3 protein. (445 aa)
	CRE_04702	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (446 aa)
	CRE_07342	Uncharacterized protein. (64 aa)
	CRE_07343	Uncharacterized protein. (155 aa)
	CRE_15280	Uncharacterized protein. (365 aa)
	Cre-tra-4	CRE-TRA-4 protein. (506 aa)
	Cre-hda-1	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (509 aa)
	Cre-xtr-2	CRE-XTR-2 protein. (311 aa)
	CRE_12419	Uncharacterized protein. (654 aa)
	CRE_14070	Uncharacterized protein. (443 aa)
	Cre-tra-1	CRE-TRA-1 protein. (1119 aa)
	Cre-cul-2	CRE-CUL-2 protein; Belongs to the cullin family. (815 aa)
	Cre-tra-2	CRE-TRA-2 protein. (1499 aa)
	CRE_21565	Uncharacterized protein. (404 aa)
	CRE_11407	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (593 aa)
	Cre-tra-3	CRE-TRA-3 protein; Belongs to the peptidase C2 family. (672 aa)
	CRE_21947	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (459 aa)
	CRE_16588	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (331 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_04678	CRE_04702	E3LYN4	E3LYT3	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.476
CRE_04678	CRE_11407	E3LYN4	E3N747	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.405
CRE_04678	CRE_12419	E3LYN4	E3MR03	Uncharacterized protein.	Uncharacterized protein.	0.549
CRE_04678	CRE_14070	E3LYN4	E3MRD0	Uncharacterized protein.	Uncharacterized protein.	0.605
CRE_04678	CRE_16588	E3LYN4	E3NW07	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.405
CRE_04678	CRE_21947	E3LYN4	E3MUH8	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.476
CRE_04678	Cre-fem-3	E3LYN4	E3NMC5	Uncharacterized protein.	CRE-FEM-3 protein.	0.605
CRE_04678	Cre-hda-1	E3LYN4	E3MNE9	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.476
CRE_04678	Cre-tra-2	E3LYN4	E3LQQ1	Uncharacterized protein.	CRE-TRA-2 protein.	0.709
CRE_04678	Cre-tra-3	E3LYN4	E3N746	Uncharacterized protein.	CRE-TRA-3 protein; Belongs to the peptidase C2 family.	0.405
CRE_04702	CRE_04678	E3LYT3	E3LYN4	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Uncharacterized protein.	0.476
CRE_04702	CRE_15280	E3LYT3	E3MC00	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Uncharacterized protein.	0.476
CRE_04702	CRE_21565	E3LYT3	E3NFM9	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Uncharacterized protein.	0.476
CRE_04702	Cre-tra-1	E3LYT3	E3LYN5	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	CRE-TRA-1 protein.	0.476
CRE_11407	CRE_04678	E3N747	E3LYN4	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.405
CRE_11407	CRE_12419	E3N747	E3MR03	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.588
CRE_11407	CRE_14070	E3N747	E3MRD0	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.551
CRE_11407	CRE_15280	E3N747	E3MC00	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.405
CRE_11407	CRE_21565	E3N747	E3NFM9	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.405
CRE_11407	Cre-fem-3	E3N747	E3NMC5	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	CRE-FEM-3 protein.	0.551