(32 nodes) Kinesin binding network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_11583	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (316 aa)
	Cre-lfi-1	CRE-LFI-1 protein. (2356 aa)
	Cre-casy-1	CRE-CASY-1 protein. (984 aa)
	Cre-unc-16	CRE-UNC-16 protein. (1171 aa)
	CRE_30752	Uncharacterized protein. (526 aa)
	Cre-klc-2	CRE-KLC-2 protein. (559 aa)
	CRE_29536	BCNT-C domain-containing protein. (245 aa)
	Cre-air-2	CRE-AIR-2 protein; Belongs to the protein kinase superfamily. (306 aa)
	Cre-syd-2	CRE-SYD-2 protein. (1180 aa)
	Cre-osm-5	CRE-OSM-5 protein. (830 aa)
	CRE_08311	Protein kinase domain-containing protein. (431 aa)
	CRE_13426	Uncharacterized protein. (181 aa)
	CRE_15433	Uncharacterized protein. (757 aa)
	Cre-jip-1	CRE-JIP-1 protein. (1030 aa)
	Cre-ptl-1	Microtubule-associated protein. (306 aa)
	CRE_04093	Doublecortin domain-containing protein. (303 aa)
	CRE_04095	Doublecortin domain-containing protein. (451 aa)
	CRE_07662	Uncharacterized protein. (798 aa)
	CRE_08422	Protein kinase domain-containing protein. (410 aa)
	CRE_10378	TPR_REGION domain-containing protein. (424 aa)
	Cre-kca-1	CRE-KCA-1 protein. (461 aa)
	Cre-unc-76	CRE-UNC-76 protein. (506 aa)
	Cre-kap-1	CRE-KAP-1 protein. (408 aa)
	CRE_17611	Protein kinase domain-containing protein. (164 aa)
	CRE_20045	Protein kinase domain-containing protein. (527 aa)
	CRE_30238	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (309 aa)
	CRE_13770	Protein kinase domain-containing protein. (308 aa)
	CRE_13772	Protein kinase domain-containing protein. (498 aa)
	CRE_22703	Protein kinase domain-containing protein. (196 aa)
	CRE_30243	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (242 aa)
	CRE_22717	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (211 aa)
	CRE_15056	Protein kinase domain-containing protein. (268 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_04093	Cre-ptl-1	E3MMW3	E3ML96	Doublecortin domain-containing protein.	Microtubule-associated protein.	0.437
CRE_10378	CRE_13426	E3MQN8	E3M8A9	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.775
CRE_10378	Cre-casy-1	E3MQN8	E3LRE5	TPR_REGION domain-containing protein.	CRE-CASY-1 protein.	0.792
CRE_10378	Cre-jip-1	E3MQN8	E3MDP9	TPR_REGION domain-containing protein.	CRE-JIP-1 protein.	0.791
CRE_10378	Cre-kap-1	E3MQN8	E3NH28	TPR_REGION domain-containing protein.	CRE-KAP-1 protein.	0.775
CRE_10378	Cre-lfi-1	E3MQN8	E3LE90	TPR_REGION domain-containing protein.	CRE-LFI-1 protein.	0.494
CRE_10378	Cre-unc-16	E3MQN8	E3LSD1	TPR_REGION domain-containing protein.	CRE-UNC-16 protein.	0.870
CRE_10378	Cre-unc-76	E3MQN8	E3NCI6	TPR_REGION domain-containing protein.	CRE-UNC-76 protein.	0.437
CRE_13426	CRE_10378	E3M8A9	E3MQN8	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.775
CRE_13426	CRE_30752	E3M8A9	E3LU33	Uncharacterized protein.	Uncharacterized protein.	0.775
CRE_13426	Cre-kap-1	E3M8A9	E3NH28	Uncharacterized protein.	CRE-KAP-1 protein.	0.724
CRE_13426	Cre-klc-2	E3M8A9	E3LUB2	Uncharacterized protein.	CRE-KLC-2 protein.	0.775
CRE_13426	Cre-osm-5	E3M8A9	E3M290	Uncharacterized protein.	CRE-OSM-5 protein.	0.848
CRE_30752	CRE_13426	E3LU33	E3M8A9	Uncharacterized protein.	Uncharacterized protein.	0.775
CRE_30752	Cre-casy-1	E3LU33	E3LRE5	Uncharacterized protein.	CRE-CASY-1 protein.	0.792
CRE_30752	Cre-jip-1	E3LU33	E3MDP9	Uncharacterized protein.	CRE-JIP-1 protein.	0.791
CRE_30752	Cre-kap-1	E3LU33	E3NH28	Uncharacterized protein.	CRE-KAP-1 protein.	0.775
CRE_30752	Cre-lfi-1	E3LU33	E3LE90	Uncharacterized protein.	CRE-LFI-1 protein.	0.494
CRE_30752	Cre-unc-16	E3LU33	E3LSD1	Uncharacterized protein.	CRE-UNC-16 protein.	0.870
CRE_30752	Cre-unc-76	E3LU33	E3NCI6	Uncharacterized protein.	CRE-UNC-76 protein.	0.437