(28 nodes) Dynein complex network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_02718	Uncharacterized protein. (186 aa)
	CRE_20565	Uncharacterized protein. (402 aa)
	Cre-dylt-1	CRE-DYLT-1 protein. (106 aa)
	Cre-dylt-2	CRE-DYLT-2 protein. (123 aa)
	Cre-dyci-1	CRE-DYCI-1 protein. (666 aa)
	CRE_20904	Dynein light chain. (136 aa)
	CRE_20903	Uncharacterized protein. (98 aa)
	Cre-dlc-3	CRE-DLC-3 protein. (203 aa)
	CRE_20901	Dynein light chain. (62 aa)
	CRE_20900	Dynein light chain. (132 aa)
	CRE_20899	Dynein light chain. (132 aa)
	CRE_18099	Dynein light chain. (90 aa)
	Cre-che-3	CRE-CHE-3 protein. (4175 aa)
	CRE_15554	Dynein light chain. (104 aa)
	Cre-dlc-5	CRE-DLC-5 protein. (186 aa)
	Cre-xbx-1	CRE-XBX-1 protein. (416 aa)
	CRE_04066	Uncharacterized protein. (658 aa)
	Cre-dhc-1	CRE-DHC-1 protein. (4583 aa)
	Cre-dnc-1	CRE-DNC-1 protein. (1324 aa)
	Cre-dli-1	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (441 aa)
	Cre-dnc-2	CRE-DNC-2 protein. (331 aa)
	CRE_04857	DHC_N2 domain-containing protein. (1721 aa)
	CRE_04856	Uncharacterized protein. (661 aa)
	CRE_04855	Uncharacterized protein. (506 aa)
	Cre-dlc-1	Dynein light chain. (89 aa)
	CRE_30761	Uncharacterized protein. (3291 aa)
	Cre-dylt-3	CRE-DYLT-3 protein. (155 aa)
	Cre-dyrb-1	Dynein light chain roadblock. (95 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_02718	CRE_04066	E3NP89	E3MN45	Uncharacterized protein.	Uncharacterized protein.	0.505
CRE_02718	CRE_04855	E3NP89	E3LYI2	Uncharacterized protein.	Uncharacterized protein.	0.844
CRE_02718	CRE_04856	E3NP89	E3LYI6	Uncharacterized protein.	Uncharacterized protein.	0.844
CRE_02718	CRE_04857	E3NP89	E3LYI8	Uncharacterized protein.	DHC_N2 domain-containing protein.	0.844
CRE_02718	CRE_20565	E3NP89	E3NFD9	Uncharacterized protein.	Uncharacterized protein.	0.886
CRE_02718	CRE_20901	E3NP89	E3N3S3	Uncharacterized protein.	Dynein light chain.	0.565
CRE_02718	CRE_30761	E3NP89	E3LU50	Uncharacterized protein.	Uncharacterized protein.	0.844
CRE_02718	Cre-che-3	E3NP89	E3MT40	Uncharacterized protein.	CRE-CHE-3 protein.	0.890
CRE_02718	Cre-dhc-1	E3NP89	E3MG41	Uncharacterized protein.	CRE-DHC-1 protein.	0.890
CRE_02718	Cre-dli-1	E3NP89	E3M6D4	Uncharacterized protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.794
CRE_02718	Cre-dnc-1	E3NP89	E3M7K1	Uncharacterized protein.	CRE-DNC-1 protein.	0.812
CRE_02718	Cre-dnc-2	E3NP89	E3LYR2	Uncharacterized protein.	CRE-DNC-2 protein.	0.731
CRE_02718	Cre-dyci-1	E3NP89	E3N3X6	Uncharacterized protein.	CRE-DYCI-1 protein.	0.932
CRE_02718	Cre-dylt-1	E3NP89	E3NE14	Uncharacterized protein.	CRE-DYLT-1 protein.	0.836
CRE_02718	Cre-dylt-2	E3NP89	E3NAR3	Uncharacterized protein.	CRE-DYLT-2 protein.	0.853
CRE_02718	Cre-dylt-3	E3NP89	E3LGT1	Uncharacterized protein.	CRE-DYLT-3 protein.	0.836
CRE_02718	Cre-dyrb-1	E3NP89	E3LG69	Uncharacterized protein.	Dynein light chain roadblock.	0.903
CRE_02718	Cre-xbx-1	E3NP89	E3MN55	Uncharacterized protein.	CRE-XBX-1 protein.	0.849
CRE_04066	CRE_02718	E3MN45	E3NP89	Uncharacterized protein.	Uncharacterized protein.	0.505
CRE_04066	CRE_15554	E3MN45	E3MSX5	Uncharacterized protein.	Dynein light chain.	0.456