(31 nodes) Cortical cytoskeleton organization network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-crp-1	CRE-CRP-1 protein. (187 aa)
	CRE_14062	Rho-GAP domain-containing protein. (1119 aa)
	Cre-gex-3	CRE-GEX-3 protein. (1174 aa)
	Cre-act-2	CRE-ACT-2 protein. (376 aa)
	Cre-fhod-1	CRE-FHOD-1 protein. (1773 aa)
	Cre-hmp-2	CRE-HMP-2 protein. (710 aa)
	Cre-ani-1	CRE-ANI-1 protein. (1167 aa)
	Cre-ani-3	CRE-ANI-3 protein. (751 aa)
	Cre-let-502	CRE-LET-502 protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1217 aa)
	Cre-frl-1	CRE-FRL-1 protein. (1119 aa)
	CRE_15735	PH domain-containing protein. (1723 aa)
	Cre-rho-1	CRE-RHO-1 protein. (192 aa)
	CRE_01397	Uncharacterized protein. (184 aa)
	CRE_03486	Uncharacterized protein. (207 aa)
	CRE_15063	Uncharacterized protein. (184 aa)
	CRE_14414	Rho-GAP domain-containing protein. (1114 aa)
	Cre-ani-2	CRE-ANI-2 protein. (1012 aa)
	Cre-hmp-1	CRE-HMP-1 protein. (917 aa)
	Cre-rga-4	CRE-RGA-4 protein. (1148 aa)
	Cre-fbxa-137	CRE-FBXA-137 protein. (339 aa)
	Cre-evl-20	CRE-EVL-20 protein; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	Cre-saps-1	CRE-SAPS-1 protein. (810 aa)
	Cre-pph-6	Serine/threonine-protein phosphatase. (334 aa)
	Cre-fozi-1	CRE-FOZI-1 protein. (746 aa)
	Cre-chc-1	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1698 aa)
	CRE_25190	Uncharacterized protein. (195 aa)
	Cre-egg-3	CRE-EGG-3 protein. (556 aa)
	CRE_11049	Uncharacterized protein. (76 aa)
	Cre-lgl-1	CRE-LGL-1 protein. (938 aa)
	CRE_16652	PH domain-containing protein. (546 aa)
	Cre-egg-4	CRE-EGG-4 protein. (735 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01397	CRE_03486	E3NHV4	E3NIA0	Uncharacterized protein.	Uncharacterized protein.	0.852
CRE_01397	CRE_15063	E3NHV4	E3NMU6	Uncharacterized protein.	Uncharacterized protein.	0.852
CRE_01397	CRE_15735	E3NHV4	E3NFB9	Uncharacterized protein.	PH domain-containing protein.	0.580
CRE_01397	Cre-ani-1	E3NHV4	E3N318	Uncharacterized protein.	CRE-ANI-1 protein.	0.796
CRE_01397	Cre-ani-2	E3NHV4	E3LR66	Uncharacterized protein.	CRE-ANI-2 protein.	0.612
CRE_01397	Cre-ani-3	E3NHV4	E3N6G0	Uncharacterized protein.	CRE-ANI-3 protein.	0.580
CRE_01397	Cre-crp-1	E3NHV4	E3MQS7	Uncharacterized protein.	CRE-CRP-1 protein.	0.819
CRE_01397	Cre-fozi-1	E3NHV4	E3LSJ7	Uncharacterized protein.	CRE-FOZI-1 protein.	0.447
CRE_01397	Cre-frl-1	E3NHV4	E3ND51	Uncharacterized protein.	CRE-FRL-1 protein.	0.447
CRE_01397	Cre-let-502	E3NHV4	E3N7I5	Uncharacterized protein.	CRE-LET-502 protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.647
CRE_01397	Cre-rho-1	E3NHV4	E3NH51	Uncharacterized protein.	CRE-RHO-1 protein.	0.907
CRE_03486	CRE_01397	E3NIA0	E3NHV4	Uncharacterized protein.	Uncharacterized protein.	0.852
CRE_03486	CRE_11049	E3NIA0	E3M585	Uncharacterized protein.	Uncharacterized protein.	0.763
CRE_03486	CRE_14062	E3NIA0	E3MRB7	Uncharacterized protein.	Rho-GAP domain-containing protein.	0.852
CRE_03486	CRE_14414	E3NIA0	E3NRE6	Uncharacterized protein.	Rho-GAP domain-containing protein.	0.852
CRE_03486	CRE_15735	E3NIA0	E3NFB9	Uncharacterized protein.	PH domain-containing protein.	0.883
CRE_03486	CRE_16652	E3NIA0	E3MAY2	Uncharacterized protein.	PH domain-containing protein.	0.888
CRE_03486	CRE_25190	E3NIA0	E3LRT5	Uncharacterized protein.	Uncharacterized protein.	0.768
CRE_03486	Cre-act-2	E3NIA0	E3MTR9	Uncharacterized protein.	CRE-ACT-2 protein.	0.716
CRE_03486	Cre-ani-1	E3NIA0	E3N318	Uncharacterized protein.	CRE-ANI-1 protein.	0.926