(143 nodes) Extracellular matrix network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_07192	Uncharacterized protein. (456 aa)
	Cre-unc-6	CRE-UNC-6 protein. (612 aa)
	Cre-lon-2	CRE-LON-2 protein. (508 aa)
	CRE_00856	Peptidase M12B domain-containing protein. (949 aa)
	Cre-lec-1	Galectin. (284 aa)
	Cre-cut-1	CRE-CUT-1 protein. (441 aa)
	Cre-col-83	CRE-COL-83 protein. (337 aa)
	Cre-bli-1	CRE-BLI-1 protein. (944 aa)
	Cre-rol-6	CRE-ROL-6 protein. (367 aa)
	Cre-col-76	CRE-COL-76 protein. (493 aa)
	Cre-col-84	CRE-COL-84 protein. (338 aa)
	CRE_09054	Uncharacterized protein. (178 aa)
	CRE_18942	Uncharacterized protein. (439 aa)
	Cre-mig-6	CRE-MIG-6 protein. (1553 aa)
	CRE_28149	LRRCT domain-containing protein. (360 aa)
	Cre-dpy-14	CRE-DPY-14 protein. (328 aa)
	CRE_27249	Uncharacterized protein. (104 aa)
	CRE_27250	Uncharacterized protein. (223 aa)
	CRE_26954	Uncharacterized protein. (387 aa)
	CRE_26976	Uncharacterized protein. (591 aa)
	CRE_26999	Uncharacterized protein. (260 aa)
	Cre-col-158	CRE-COL-158 protein. (345 aa)
	Cre-lon-3	CRE-LON-3 protein. (324 aa)
	Cre-sqt-3	CRE-SQT-3 protein. (301 aa)
	Cre-spon-1	CRE-SPON-1 protein. (831 aa)
	Cre-agr-1	CRE-AGR-1 protein. (1376 aa)
	CRE_26246	Uncharacterized protein. (793 aa)
	CRE_25483	ZnMc domain-containing protein. (467 aa)
	CRE_25221	Uncharacterized protein. (253 aa)
	Cre-emb-9	CRE-EMB-9 protein. (1804 aa)
	Cre-nid-1	CRE-NID-1 protein. (1609 aa)
	Cre-dpy-5	CRE-DPY-5 protein. (284 aa)
	Cre-cle-1	CRE-CLE-1 protein. (1235 aa)
	Cre-lam-3	CRE-LAM-3 protein. (3122 aa)
	CRE_02982	Uncharacterized protein. (513 aa)
	CRE_03910	Uncharacterized protein. (2551 aa)
	CRE_03918	Uncharacterized protein. (521 aa)
	Cre-cut-6	CRE-CUT-6 protein. (576 aa)
	Cre-zmp-1	CRE-ZMP-1 protein. (322 aa)
	Cre-cri-2	CRE-CRI-2 protein. (158 aa)
	CRE_05501	NTR domain-containing protein. (153 aa)
	CRE_05401	Uncharacterized protein. (926 aa)
	Cre-col-71	CRE-COL-71 protein. (349 aa)
	CRE_06354	Uncharacterized protein. (778 aa)
	CRE_07445	Apple domain-containing protein. (847 aa)
	Cre-pxn-2	CRE-PXN-2 protein. (1360 aa)
	CRE_07288	Col_cuticle_N domain-containing protein. (283 aa)
	CRE_07289	Col_cuticle_N domain-containing protein. (283 aa)
	CRE_08204	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (470 aa)
	CRE_08047	Uncharacterized protein. (674 aa)
	CRE_11823	Peptidase_M23 domain-containing protein. (335 aa)
	Cre-col-14	CRE-COL-14 protein. (326 aa)
	CRE_11063	Fibrinogen C-terminal domain-containing protein. (457 aa)
	Cre-epi-1	CRE-EPI-1 protein. (3753 aa)
	CRE_11006	Uncharacterized protein. (425 aa)
	CRE_09968	Uncharacterized protein. (419 aa)
	Cre-col-99	CRE-COL-99 protein. (1181 aa)
	Cre-col-128	CRE-COL-128 protein. (425 aa)
	Cre-pat-3	Integrin beta; Belongs to the integrin beta chain family. (829 aa)
	Cre-col-19	CRE-COL-19 protein. (297 aa)
	CRE_17279	Peptidase S72 domain-containing protein. (420 aa)
	Cre-him-4	CRE-HIM-4 protein. (2924 aa)
	CRE_16675	Uncharacterized protein. (1105 aa)
	CRE_16676	Uncharacterized protein. (1247 aa)
	Cre-mec-5	CRE-MEC-5 protein. (327 aa)
	CRE_15976	ZnMc domain-containing protein. (575 aa)
	CRE_20322	Uncharacterized protein. (1199 aa)
	Cre-hse-5	CRE-HSE-5 protein. (645 aa)
	Cre-unc-52	CRE-UNC-52 protein. (3425 aa)
	CRE_24983	Uncharacterized protein. (431 aa)
	CRE_24984	I-set domain-containing protein. (417 aa)
	CRE_01027	Col_cuticle_N domain-containing protein. (289 aa)
	Cre-gpn-1	CRE-GPN-1 protein; Belongs to the glypican family. (547 aa)
	CRE_19104	Uncharacterized protein. (731 aa)
	CRE_19248	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins which plays important roles in the quality control and ER-associated degradation of GPI-anchored proteins. (506 aa)
	CRE_27584	Uncharacterized protein. (449 aa)
	Cre-let-2	CRE-LET-2 protein. (1293 aa)
	Cre-cdh-3	CRE-CDH-3 protein. (3351 aa)
	CRE_31186	Uncharacterized protein. (443 aa)
	CRE_31200	Uncharacterized protein. (156 aa)
	CRE_31239	Uncharacterized protein. (119 aa)
	Cre-col-123	CRE-COL-123 protein. (351 aa)
	Cre-gon-1	CRE-GON-1 protein. (2717 aa)
	Cre-pxf-1	CRE-PXF-1 protein. (1476 aa)
	CRE_29936	Uncharacterized protein. (537 aa)
	Cre-col-87	CRE-COL-87 protein. (587 aa)
	CRE_04892	ZnMc domain-containing protein. (472 aa)
	CRE_07653	Uncharacterized protein. (193 aa)
	CRE_07654	Uncharacterized protein. (604 aa)
	Cre-mig-17	CRE-MIG-17 protein. (494 aa)
	CRE_13469	Uncharacterized protein. (1815 aa)
	CRE_16166	Peptidase_M10 domain-containing protein. (158 aa)
	Cre-col-153	CRE-COL-153 protein. (328 aa)
	Cre-adt-1	CRE-ADT-1 protein. (1426 aa)
	CRE_24123	ZnMc domain-containing protein. (368 aa)
	CRE_22899	Laminin N-terminal domain-containing protein. (262 aa)
	CRE_12166	Uncharacterized protein. (922 aa)
	Cre-dpy-4	CRE-DPY-4 protein. (256 aa)
	CRE_16296	Fibrinogen C-terminal domain-containing protein. (363 aa)
	Cre-col-78	CRE-COL-78 protein. (229 aa)
	CRE_09743	Uncharacterized protein. (371 aa)
	CRE_09728	Collagen IV NC1 domain-containing protein. (165 aa)
	CRE_27809	Uncharacterized protein. (76 aa)
	CRE_08489	Peptidase_M10 domain-containing protein. (358 aa)
	CRE_14913	ShKT domain-containing protein. (674 aa)
	Cre-cpz-1	CRE-CPZ-1 protein; Belongs to the peptidase C1 family. (306 aa)
	Cre-elks-1	CRE-ELKS-1 protein. (868 aa)
	CRE_30392	Uncharacterized protein. (242 aa)
	CRE_04293	Fibrinogen C-terminal domain-containing protein. (484 aa)
	CRE_24781	ZnMc domain-containing protein. (281 aa)
	CRE_01348	Anaphylatoxin-like domain-containing protein. (184 aa)
	CRE_01349	Fibulin-1; Belongs to the fibulin family. (653 aa)
	Cre-ost-1	CRE-OST-1 protein. (264 aa)
	CRE_10660	Uncharacterized protein. (881 aa)
	CRE_14974	Uncharacterized protein. (228 aa)
	CRE_16367	Uncharacterized protein. (162 aa)
	Cre-tol-1	CRE-TOL-1 protein. (358 aa)
	CRE_18242	Peptidase S72 domain-containing protein. (362 aa)
	CRE_02662	Fibrinogen C-terminal domain-containing protein. (191 aa)
	CRE_20059	Uncharacterized protein. (146 aa)
	Cre-dpy-13	CRE-DPY-13 protein. (304 aa)
	CRE_20619	Pep_M12B_propep domain-containing protein. (281 aa)
	Cre-col-105	CRE-COL-105 protein. (282 aa)
	CRE_23795	Fibrinogen C-terminal domain-containing protein. (453 aa)
	CRE_21031	Uncharacterized protein. (1062 aa)
	CRE_27943	GON domain-containing protein. (382 aa)
	CRE_15812	Fibulin-1; Belongs to the fibulin family. (867 aa)
	CRE_15813	Uncharacterized protein. (175 aa)
	CRE_26872	Uncharacterized protein. (82 aa)
	CRE_17681	Fibrinogen C-terminal domain-containing protein. (390 aa)
	Cre-lam-1	CRE-LAM-1 protein. (1264 aa)
	CRE_03571	Col_cuticle_N domain-containing protein. (354 aa)
	CRE_12441	Uncharacterized protein. (174 aa)
	CRE_22733	Uncharacterized protein. (355 aa)
	CRE_10785	Uncharacterized protein. (262 aa)
	CRE_20168	Uncharacterized protein. (318 aa)
	Cre-adt-2	CRE-ADT-2 protein. (1042 aa)
	Cre-dpy-7	CRE-DPY-7 protein. (334 aa)
	CRE_00552	LRRCT domain-containing protein. (582 aa)
	Cre-lam-2	CRE-LAM-2 protein. (1550 aa)
	CRE_00095	Uncharacterized protein. (86 aa)
	CRE_00099	Uncharacterized protein. (1179 aa)
	CRE_00574	Uncharacterized protein. (566 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00095	CRE_07192	E3LD48	E3NVQ7	Uncharacterized protein.	Uncharacterized protein.	0.929
CRE_00095	CRE_07653	E3LD48	E3MP40	Uncharacterized protein.	Uncharacterized protein.	0.871
CRE_00095	CRE_07654	E3LD48	E3MP41	Uncharacterized protein.	Uncharacterized protein.	0.871
CRE_00095	CRE_13469	E3LD48	E3MR61	Uncharacterized protein.	Uncharacterized protein.	0.871
CRE_00095	CRE_21031	E3LD48	E3NND4	Uncharacterized protein.	Uncharacterized protein.	0.929
CRE_00095	CRE_22899	E3LD48	E3MW02	Uncharacterized protein.	Laminin N-terminal domain-containing protein.	0.929
CRE_00095	CRE_30392	E3LD48	E3NAE5	Uncharacterized protein.	Uncharacterized protein.	0.871
CRE_00095	CRE_31186	E3LD48	E3MLH2	Uncharacterized protein.	Uncharacterized protein.	0.446
CRE_00095	Cre-emb-9	E3LD48	E3LSI3	Uncharacterized protein.	CRE-EMB-9 protein.	0.446
CRE_00095	Cre-epi-1	E3LD48	E3M5E7	Uncharacterized protein.	CRE-EPI-1 protein.	0.929
CRE_00095	Cre-lam-1	E3LD48	E3NQJ8	Uncharacterized protein.	CRE-LAM-1 protein.	0.871
CRE_00095	Cre-lam-3	E3LD48	E3LVX7	Uncharacterized protein.	CRE-LAM-3 protein.	0.969
CRE_00095	Cre-nid-1	E3LD48	E3LTX5	Uncharacterized protein.	CRE-NID-1 protein.	0.828
CRE_00095	Cre-pat-3	E3LD48	E3M8G5	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.955
CRE_00099	CRE_09743	E3LD57	E3N4Z3	Uncharacterized protein.	Uncharacterized protein.	0.506
CRE_00099	Cre-mig-6	E3LD57	E3LKC5	Uncharacterized protein.	CRE-MIG-6 protein.	0.467
CRE_00099	Cre-spon-1	E3LD57	E3LQK5	Uncharacterized protein.	CRE-SPON-1 protein.	0.559
CRE_00552	CRE_05401	E3LD21	E3M0C8	LRRCT domain-containing protein.	Uncharacterized protein.	0.454
CRE_00552	CRE_09743	E3LD21	E3N4Z3	LRRCT domain-containing protein.	Uncharacterized protein.	0.477
CRE_00552	CRE_17279	E3LD21	E3MAI4	LRRCT domain-containing protein.	Peptidase S72 domain-containing protein.	0.521