(35 nodes) Negative regulation of response to external stimulus network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_08659	Uncharacterized protein. (400 aa)
	CRE_08660	Uncharacterized protein. (308 aa)
	CRE_08661	Uncharacterized protein. (393 aa)
	CRE_27097	Uncharacterized protein. (822 aa)
	Cre-crn-7	CRE-CRN-7 protein. (371 aa)
	CRE_30867	DC_STAMP domain-containing protein. (810 aa)
	CRE_03619	Sulfhydryl oxidase. (165 aa)
	Cre-unc-40	CRE-UNC-40 protein. (1432 aa)
	Cre-mab-20	CRE-MAB-20 protein; Belongs to the semaphorin family. (659 aa)
	CRE_07232	DM13 domain-containing protein. (886 aa)
	Cre-pxn-2	CRE-PXN-2 protein. (1360 aa)
	CRE_07559	Uncharacterized protein. (519 aa)
	Cre-vhp-1	CRE-VHP-1 protein. (650 aa)
	Cre-tsp-9	Tetraspanin. (233 aa)
	Cre-nuc-1	CRE-NUC-1 protein. (393 aa)
	CRE_15991	Nuclear receptor domain-containing protein. (85 aa)
	Cre-slt-1	CRE-SLT-1 protein. (857 aa)
	CRE_15303	Uncharacterized protein. (574 aa)
	Cre-fsn-1	CRE-FSN-1 protein. (346 aa)
	Cre-atf-7	CRE-ATF-7 protein. (516 aa)
	CRE_19716	G-patch domain-containing protein. (504 aa)
	Cre-nol-6	Nucleolar protein 6. (906 aa)
	Cre-smp-1	CRE-SMP-1 protein; Belongs to the semaphorin family. (711 aa)
	Cre-smp-2	CRE-SMP-2 protein; Belongs to the semaphorin family. (657 aa)
	Cre-zip-3	CRE-ZIP-3 protein. (312 aa)
	Cre-efa-6	CRE-EFA-6 protein. (775 aa)
	Cre-goa-1	CRE-GOA-1 protein. (354 aa)
	Cre-pgrn-1	CRE-PGRN-1 protein. (297 aa)
	Cre-jnk-1	Mitogen-activated protein kinase. (495 aa)
	CRE_30190	Uncharacterized protein. (827 aa)
	CRE_23824	Mitogen-activated protein kinase. (463 aa)
	CRE_00223	Uncharacterized protein. (511 aa)
	CRE_18369	Uncharacterized protein. (331 aa)
	Cre-octr-1	CRE-OCTR-1 protein; Belongs to the G-protein coupled receptor 1 family. (424 aa)
	CRE_08658	Uncharacterized protein. (407 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_15303	Cre-slt-1	E3MC36	E3MC35	Uncharacterized protein.	CRE-SLT-1 protein.	0.921
CRE_15303	Cre-unc-40	E3MC36	E3LXC8	Uncharacterized protein.	CRE-UNC-40 protein.	0.913
CRE_23824	Cre-atf-7	E3NRT8	E3MCY7	Mitogen-activated protein kinase.	CRE-ATF-7 protein.	0.881
CRE_23824	Cre-vhp-1	E3NRT8	E3M4I9	Mitogen-activated protein kinase.	CRE-VHP-1 protein.	0.987
Cre-atf-7	CRE_23824	E3MCY7	E3NRT8	CRE-ATF-7 protein.	Mitogen-activated protein kinase.	0.881
Cre-atf-7	Cre-jnk-1	E3MCY7	E3NE84	CRE-ATF-7 protein.	Mitogen-activated protein kinase.	0.881
Cre-atf-7	Cre-vhp-1	E3MCY7	E3M4I9	CRE-ATF-7 protein.	CRE-VHP-1 protein.	0.674
Cre-atf-7	Cre-zip-3	E3MCY7	E3MMW5	CRE-ATF-7 protein.	CRE-ZIP-3 protein.	0.757
Cre-crn-7	Cre-nol-6	E3LT03	E3MDM2	CRE-CRN-7 protein.	Nucleolar protein 6.	0.448
Cre-crn-7	Cre-nuc-1	E3LT03	E3MAY3	CRE-CRN-7 protein.	CRE-NUC-1 protein.	0.937
Cre-goa-1	Cre-octr-1	E3N7N0	E3LDX5	CRE-GOA-1 protein.	CRE-OCTR-1 protein; Belongs to the G-protein coupled receptor 1 family.	0.767
Cre-jnk-1	Cre-atf-7	E3NE84	E3MCY7	Mitogen-activated protein kinase.	CRE-ATF-7 protein.	0.881
Cre-jnk-1	Cre-vhp-1	E3NE84	E3M4I9	Mitogen-activated protein kinase.	CRE-VHP-1 protein.	0.987
Cre-mab-20	Cre-smp-1	E3LXX6	E3MFE0	CRE-MAB-20 protein; Belongs to the semaphorin family.	CRE-SMP-1 protein; Belongs to the semaphorin family.	0.852
Cre-mab-20	Cre-smp-2	E3LXX6	E3MGB5	CRE-MAB-20 protein; Belongs to the semaphorin family.	CRE-SMP-2 protein; Belongs to the semaphorin family.	0.660
Cre-mab-20	Cre-unc-40	E3LXX6	E3LXC8	CRE-MAB-20 protein; Belongs to the semaphorin family.	CRE-UNC-40 protein.	0.479
Cre-nol-6	Cre-crn-7	E3MDM2	E3LT03	Nucleolar protein 6.	CRE-CRN-7 protein.	0.448
Cre-nuc-1	Cre-crn-7	E3MAY3	E3LT03	CRE-NUC-1 protein.	CRE-CRN-7 protein.	0.937
Cre-octr-1	Cre-goa-1	E3LDX5	E3N7N0	CRE-OCTR-1 protein; Belongs to the G-protein coupled receptor 1 family.	CRE-GOA-1 protein.	0.767
Cre-pxn-2	Cre-tsp-9	E3M2I2	E3MA01	CRE-PXN-2 protein.	Tetraspanin.	0.457