(38 nodes) Polar body extrusion after meiotic divisions network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-csc-1	CRE-CSC-1 protein. (214 aa)
	Cre-fbxa-137	CRE-FBXA-137 protein. (339 aa)
	Cre-plk-1	Serine/threonine-protein kinase PLK. (648 aa)
	CRE_30752	Uncharacterized protein. (526 aa)
	Cre-klc-2	CRE-KLC-2 protein. (559 aa)
	CRE_02881	Uncharacterized protein. (329 aa)
	Cre-cyk-4	CRE-CYK-4 protein. (680 aa)
	Cre-atx-2	CRE-ATX-2 protein. (1020 aa)
	Cre-egg-3	CRE-EGG-3 protein. (556 aa)
	Cre-fzy-1	CRE-FZY-1 protein. (508 aa)
	Cre-cdc-14	CRE-CDC-14 protein. (767 aa)
	Cre-cyp-31A2	CRE-CYP-31A2 protein. (806 aa)
	CRE_13905	DDE_3 domain-containing protein. (139 aa)
	Cre-egg-4	CRE-EGG-4 protein. (735 aa)
	CRE_23462	Uncharacterized protein. (329 aa)
	Cre-unc-116	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (839 aa)
	Cre-rack-1	CRE-RACK-1 protein. (325 aa)
	CRE_10378	TPR_REGION domain-containing protein. (424 aa)
	Cre-zen-4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (779 aa)
	Cre-kca-1	CRE-KCA-1 protein. (461 aa)
	Cre-ppfr-1	CRE-PPFR-1 protein. (1526 aa)
	CRE_24561	DDE_3 domain-containing protein. (208 aa)
	Cre-cyp-42A1	CRE-CYP-42A1 protein; Belongs to the cytochrome P450 family. (512 aa)
	Cre-ani-1	CRE-ANI-1 protein. (1167 aa)
	CRE_20905	DDE_3 domain-containing protein. (121 aa)
	CRE_09716	Uncharacterized protein. (487 aa)
	CRE_19936	HTH_Tnp_Tc3_1 domain-containing protein. (221 aa)
	CRE_19968	Uncharacterized protein. (329 aa)
	CRE_12286	DDE_3 domain-containing protein. (173 aa)
	CRE_24833	Uncharacterized protein. (329 aa)
	CRE_01407	Uncharacterized protein. (342 aa)
	CRE_12406	DDE_3 domain-containing protein. (248 aa)
	CRE_27980	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (376 aa)
	CRE_10761	DDE_3 domain-containing protein. (250 aa)
	CRE_04476	DDE_3 domain-containing protein. (130 aa)
	CRE_23859	Uncharacterized protein. (273 aa)
	CRE_01513	Uncharacterized protein. (329 aa)
	CRE_29403	Uncharacterized protein. (160 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_04476	CRE_19936	E3NV21	E3N8D8	DDE_3 domain-containing protein.	HTH_Tnp_Tc3_1 domain-containing protein.	0.411
CRE_10378	Cre-cyk-4	E3MQN8	E3LYH9	TPR_REGION domain-containing protein.	CRE-CYK-4 protein.	0.659
CRE_10378	Cre-fzy-1	E3MQN8	E3M4P1	TPR_REGION domain-containing protein.	CRE-FZY-1 protein.	0.631
CRE_10378	Cre-plk-1	E3MQN8	E3LT50	TPR_REGION domain-containing protein.	Serine/threonine-protein kinase PLK.	0.547
CRE_10378	Cre-unc-116	E3MQN8	E3MI93	TPR_REGION domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.980
CRE_10761	CRE_19936	E3NSV8	E3N8D8	DDE_3 domain-containing protein.	HTH_Tnp_Tc3_1 domain-containing protein.	0.405
CRE_19936	CRE_04476	E3N8D8	E3NV21	HTH_Tnp_Tc3_1 domain-containing protein.	DDE_3 domain-containing protein.	0.411
CRE_19936	CRE_10761	E3N8D8	E3NSV8	HTH_Tnp_Tc3_1 domain-containing protein.	DDE_3 domain-containing protein.	0.405
CRE_19936	CRE_20905	E3N8D8	E3N3S9	HTH_Tnp_Tc3_1 domain-containing protein.	DDE_3 domain-containing protein.	0.411
CRE_20905	CRE_19936	E3N3S9	E3N8D8	DDE_3 domain-containing protein.	HTH_Tnp_Tc3_1 domain-containing protein.	0.411
CRE_27980	Cre-ani-1	E3NSN5	E3N318	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CRE-ANI-1 protein.	0.869
CRE_27980	Cre-cyk-4	E3NSN5	E3LYH9	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CRE-CYK-4 protein.	0.999
CRE_27980	Cre-fzy-1	E3NSN5	E3M4P1	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CRE-FZY-1 protein.	0.566
CRE_27980	Cre-plk-1	E3NSN5	E3LT50	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Serine/threonine-protein kinase PLK.	0.924
CRE_27980	Cre-unc-116	E3NSN5	E3MI93	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.675
CRE_30752	Cre-cyk-4	E3LU33	E3LYH9	Uncharacterized protein.	CRE-CYK-4 protein.	0.659
CRE_30752	Cre-fzy-1	E3LU33	E3M4P1	Uncharacterized protein.	CRE-FZY-1 protein.	0.631
CRE_30752	Cre-plk-1	E3LU33	E3LT50	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.547
CRE_30752	Cre-unc-116	E3LU33	E3MI93	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.980
Cre-ani-1	CRE_27980	E3N318	E3NSN5	CRE-ANI-1 protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.869