143 items (Caenorhabditis remanei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_12152	Uncharacterized protein. (501 aa)
	CRE_11009	RBR-type E3 ubiquitin transferase. (438 aa)
	Cre-fzr-1	CRE-FZR-1 protein. (733 aa)
	CRE_06971	Uncharacterized protein. (623 aa)
	Cre-rpt-6	CRE-RPT-6 protein; Belongs to the AAA ATPase family. (408 aa)
	CRE_19474	Uncharacterized protein. (742 aa)
	CRE_19475	Uncharacterized protein. (743 aa)
	CRE_14986	Uncharacterized protein. (684 aa)
	CRE_22667	Uncharacterized protein. (632 aa)
	CRE_22682	Uncharacterized protein. (609 aa)
	CRE_22683	Uncharacterized protein. (620 aa)
	CRE_22669	Uncharacterized protein. (618 aa)
	CRE_22670	Uncharacterized protein. (601 aa)
	CRE_12328	BTB domain-containing protein. (461 aa)
	CRE_15750	Uncharacterized protein. (565 aa)
	Cre-usp-14	CRE-USP-14 protein; Belongs to the peptidase C19 family. (546 aa)
	Cre-ubxn-2	CRE-UBXN-2 protein. (42 aa)
	CRE_23213	Uncharacterized protein. (690 aa)
	CRE_25974	AAA_lid_3 domain-containing protein. (114 aa)
	CRE_25978	Uncharacterized protein. (609 aa)
	CRE_18307	Uncharacterized protein. (578 aa)
	CRE_24880	Uncharacterized protein. (743 aa)
	CRE_24881	Uncharacterized protein. (652 aa)
	CRE_25987	Uncharacterized protein. (729 aa)
	CRE_25988	Uncharacterized protein. (746 aa)
	CRE_25989	Uncharacterized protein. (716 aa)
	CRE_21657	Uncharacterized protein. (2639 aa)
	Cre-ivd-1	CRE-IVD-1 protein. (418 aa)
	CRE_15833	BTB domain-containing protein. (328 aa)
	CRE_04474	RBR-type E3 ubiquitin transferase. (381 aa)
	CRE_04475	RBR-type E3 ubiquitin transferase. (393 aa)
	CRE_03596	Uncharacterized protein. (323 aa)
	CRE_26926	Uncharacterized protein. (86 aa)
	Cre-sft-4	CRE-SFT-4 protein. (277 aa)
	CRE_00337	Uncharacterized protein. (1075 aa)
	CRE_02190	RIC1 domain-containing protein. (1487 aa)
	Cre-cdc-48.1	CRE-CDC-48.1 protein; Belongs to the AAA ATPase family. (809 aa)
	CRE_01911	Uncharacterized protein. (229 aa)
	CRE_02019	AAA domain-containing protein; Belongs to the AAA ATPase family. (438 aa)
	Cre-ufd-2	CRE-UFD-2 protein. (972 aa)
	Cre-ubh-4	Ubiquitin carboxyl-terminal hydrolase. (326 aa)
	Cre-zyg-11	CRE-ZYG-11 protein. (809 aa)
	CRE_09260	Uncharacterized protein. (687 aa)
	CRE_09261	Uncharacterized protein. (701 aa)
	CRE_09262	Uncharacterized protein. (295 aa)
	CRE_09263	Uncharacterized protein. (350 aa)
	CRE_08898	Uncharacterized protein. (703 aa)
	CRE_09394	AAA domain-containing protein; Belongs to the AAA ATPase family. (416 aa)
	CRE_19084	Uncharacterized protein. (493 aa)
	Cre-ari-1	RBR-type E3 ubiquitin transferase. (495 aa)
	CRE_28131	Uncharacterized protein. (108 aa)
	Cre-rpt-5	CRE-RPT-5 protein; Belongs to the AAA ATPase family. (430 aa)
	Cre-daf-16	CRE-DAF-16 protein. (528 aa)
	Cre-pry-1	CRE-PRY-1 protein. (643 aa)
	CRE_28562	Uncharacterized protein; Belongs to the AAA ATPase family. (309 aa)
	CRE_28272	AAA domain-containing protein; Belongs to the AAA ATPase family. (409 aa)
	Cre-rpt-1	CRE-RPT-1 protein; Belongs to the AAA ATPase family. (435 aa)
	Cre-lin-23	CRE-LIN-23 protein. (672 aa)
	Cre-sma-6	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (632 aa)
	Cre-alx-1	CRE-ALX-1 protein. (896 aa)
	CRE_30765	Uncharacterized protein. (148 aa)
	Cre-rpt-2	CRE-RPT-2 protein; Belongs to the AAA ATPase family. (443 aa)
	Cre-chn-1	CRE-CHN-1 protein. (266 aa)
	Cre-gei-17	CRE-GEI-17 protein. (654 aa)
	Cre-daf-2	Receptor protein-tyrosine kinase. (1883 aa)
	Cre-rpn-2	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family. (978 aa)
	CRE_02968	RBR-type E3 ubiquitin transferase. (461 aa)
	CRE_03184	AAA domain-containing protein; Belongs to the AAA ATPase family. (443 aa)
	Cre-pdr-1	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (387 aa)
	Cre-sma-4	Dwarfin sma. (594 aa)
	CRE_04743	RBR-type E3 ubiquitin transferase. (506 aa)
	Cre-cri-2	CRE-CRI-2 protein. (158 aa)
	CRE_05501	NTR domain-containing protein. (153 aa)
	CRE_06499	RBR-type E3 ubiquitin transferase. (465 aa)
	CRE_06507	RBR-type E3 ubiquitin transferase. (465 aa)
	CRE_06577	Uncharacterized protein. (100 aa)
	CRE_06578	RBR-type E3 ubiquitin transferase. (354 aa)
	CRE_11663	Uncharacterized protein. (93 aa)
	Cre-fzy-1	CRE-FZY-1 protein. (508 aa)
	CRE_14579	AAA domain-containing protein; Belongs to the AAA ATPase family. (404 aa)
	CRE_17218	RING-type domain-containing protein. (390 aa)
	CRE_16802	Uncharacterized protein. (576 aa)
	CRE_16803	Uncharacterized protein. (685 aa)
	CRE_20214	PDZ domain-containing protein. (377 aa)
	CRE_20261	Protein kinase domain-containing protein. (1042 aa)
	Cre-wwp-1	E3 ubiquitin-protein ligase. (796 aa)
	CRE_24045	Nefa_Nip30_N domain-containing protein. (240 aa)
	Cre-rpn-3	CRE-RPN-3 protein. (506 aa)
	CRE_01050	PITH domain-containing protein. (208 aa)
	CRE_01016	Uncharacterized protein. (266 aa)
	CRE_09505	RBR-type E3 ubiquitin transferase. (468 aa)
	CRE_09580	RBR-type E3 ubiquitin transferase. (486 aa)
	CRE_09549	Uncharacterized protein. (597 aa)
	CRE_09489	Uncharacterized protein. (596 aa)
	Cre-nipi-3	CRE-NIPI-3 protein. (659 aa)
	CRE_19265	RBR-type E3 ubiquitin transferase. (797 aa)
	CRE_28735	Uncharacterized protein. (739 aa)
	Cre-zer-1	CRE-ZER-1 protein. (887 aa)
	CRE_12013	RBR-type E3 ubiquitin transferase. (468 aa)
	CRE_12023	Uncharacterized protein. (923 aa)
	Cre-tag-314	RBR-type E3 ubiquitin transferase. (419 aa)
	CRE_13504	RBR-type E3 ubiquitin transferase. (482 aa)
	CRE_13526	Uncharacterized protein. (418 aa)
	CRE_20401	UBX domain-containing protein. (337 aa)
	CRE_21332	RBR-type E3 ubiquitin transferase. (457 aa)
	CRE_23600	AAA domain-containing protein; Belongs to the AAA ATPase family. (329 aa)
	Cre-apr-1	CRE-APR-1 protein. (1093 aa)
	CRE_09685	ANK_REP_REGION domain-containing protein. (264 aa)
	CRE_06902	Uncharacterized protein. (553 aa)
	Cre-ubxn-1	CRE-UBXN-1 protein. (307 aa)
	CRE_13608	G_PROTEIN_RECEP_F1_2 domain-containing protein. (906 aa)
	Cre-rpt-4	CRE-RPT-4 protein; Belongs to the AAA ATPase family. (492 aa)
	CRE_20484	Uncharacterized protein. (669 aa)
	CRE_20486	Uncharacterized protein. (721 aa)
	CRE_20457	Uncharacterized protein. (710 aa)
	CRE_20458	Uncharacterized protein. (1392 aa)
	CRE_20487	Uncharacterized protein. (682 aa)
	CRE_20459	Uncharacterized protein. (780 aa)
	CRE_20499	Uncharacterized protein. (706 aa)
	Cre-ubxn-3	CRE-UBXN-3 protein. (569 aa)
	Cre-rpn-1	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family. (989 aa)
	CRE_09745	Uncharacterized protein. (195 aa)
	CRE_07764	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (383 aa)
	Cre-mpk-1	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (394 aa)
	CRE_12258	RBR-type E3 ubiquitin transferase. (485 aa)
	CRE_19970	Uncharacterized protein. (1097 aa)
	CRE_19426	Uncharacterized protein. (715 aa)
	CRE_19427	Uncharacterized protein. (746 aa)
	CRE_19428	Uncharacterized protein. (729 aa)
	CRE_19430	Uncharacterized protein. (715 aa)
	CRE_19431	Uncharacterized protein. (746 aa)
	CRE_19458	Uncharacterized protein. (488 aa)
	Cre-let-23	Receptor protein-tyrosine kinase. (1264 aa)
	CRE_11010	RBR-type E3 ubiquitin transferase. (393 aa)
	CRE_11011	RBR-type E3 ubiquitin transferase. (546 aa)
	Cre-hecd-1	CRE-HECD-1 protein. (2775 aa)
	CRE_12530	MFS domain-containing protein. (543 aa)
	Cre-kin-19	CRE-KIN-19 protein; Belongs to the protein kinase superfamily. (341 aa)
	CRE_13377	Acetyl-coenzyme A synthetase. (680 aa)
	CRE_13990	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (444 aa)
	Cre-gsk-3	CRE-GSK-3 protein; Belongs to the protein kinase superfamily. (362 aa)
	Cre-aex-6	CRE-AEX-6 protein. (215 aa)
	CRE_14692	Uncharacterized protein. (89 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01016	CRE_02019	E3MIE0	E3LGV3	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.813
CRE_01016	CRE_03184	E3MIE0	E3LX06	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.841
CRE_01016	CRE_09394	E3MIE0	E3LIK9	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.841
CRE_01016	CRE_09685	E3MIE0	E3MX01	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.518
CRE_01016	CRE_13990	E3MIE0	E3M8P0	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.684
CRE_01016	CRE_14579	E3MIE0	E3M9M3	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.896
CRE_01016	CRE_14692	E3MIE0	E3M9L9	Uncharacterized protein.	Uncharacterized protein.	0.844
CRE_01016	CRE_23600	E3MIE0	E3MVR7	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.896
CRE_01016	CRE_24045	E3MIE0	E3MG75	Uncharacterized protein.	Nefa_Nip30_N domain-containing protein.	0.921
CRE_01016	CRE_25974	E3MIE0	E3NMZ7	Uncharacterized protein.	AAA_lid_3 domain-containing protein.	0.830
CRE_01016	CRE_28131	E3MIE0	E3LMG5	Uncharacterized protein.	Uncharacterized protein.	0.684
CRE_01016	CRE_28272	E3MIE0	E3LN27	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.830
CRE_01016	CRE_28562	E3MIE0	E3LN24	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.830
CRE_01016	Cre-cdc-48.1	E3MIE0	E3LFQ3	Uncharacterized protein.	CRE-CDC-48.1 protein; Belongs to the AAA ATPase family.	0.745
CRE_01016	Cre-fzr-1	E3MIE0	E3NB14	Uncharacterized protein.	CRE-FZR-1 protein.	0.722
CRE_01016	Cre-fzy-1	E3MIE0	E3M4P1	Uncharacterized protein.	CRE-FZY-1 protein.	0.722
CRE_01016	Cre-gsk-3	E3MIE0	E3M8P4	Uncharacterized protein.	CRE-GSK-3 protein; Belongs to the protein kinase superfamily.	0.684
CRE_01016	Cre-rpn-1	E3MIE0	E3N3U9	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.906
CRE_01016	Cre-rpn-2	E3MIE0	E3LWQ4	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family.	0.920
CRE_01016	Cre-rpn-3	E3MIE0	E3MI14	Uncharacterized protein.	CRE-RPN-3 protein.	0.819