(48 nodes) Ribosome assembly network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_24527	Brix domain-containing protein. (401 aa)
	Cre-rpl-25.1	CRE-RPL-25.1 protein. (165 aa)
	Cre-rpl-5	CRE-RPL-5 protein. (293 aa)
	Cre-rpl-10	CRE-RPL-10 protein. (214 aa)
	Cre-rps-27	CRE-RPS-27 protein. (83 aa)
	CRE_27425	Uncharacterized protein. (208 aa)
	CRE_27426	C2H2-type domain-containing protein. (629 aa)
	Cre-rps-14	CRE-RPS-14 protein; Belongs to the universal ribosomal protein uS11 family. (152 aa)
	Cre-rpl-6	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (217 aa)
	Cre-cri-3	CRE-CRI-3 protein. (236 aa)
	Cre-rrbs-1	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (369 aa)
	CRE_29632	Uncharacterized protein. (287 aa)
	Cre-rps-15	CRE-RPS-15 protein; Belongs to the universal ribosomal protein uS19 family. (151 aa)
	Cre-rpa-0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
	CRE_03827	Uncharacterized protein. (911 aa)
	Cre-rpl-25.2	CRE-RPL-25.2 protein; Belongs to the universal ribosomal protein uL23 family. (146 aa)
	CRE_04612	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (298 aa)
	CRE_08260	Tr-type G domain-containing protein. (893 aa)
	Cre-rps-19	CRE-RPS-19 protein. (146 aa)
	CRE_10060	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4373 aa)
	CRE_12771	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (210 aa)
	Cre-rps-0	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (276 aa)
	CRE_24526	Brix domain-containing protein. (352 aa)
	CRE_24023	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	CRE_25667	Uncharacterized protein. (253 aa)
	CRE_25673	Uncharacterized protein. (143 aa)
	CRE_04018	Uncharacterized protein. (191 aa)
	CRE_06776	Brix domain-containing protein. (398 aa)
	CRE_27763	Uncharacterized protein. (270 aa)
	Cre-lpd-6	CRE-LPD-6 protein. (586 aa)
	CRE_30102	Brix domain-containing protein. (300 aa)
	CRE_11364	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (427 aa)
	Cre-eif-6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. Involved in miRNA-mediated gene silencing. (246 aa)
	CRE_20465	Uncharacterized protein. (115 aa)
	CRE_18124	WD_REPEATS_REGION domain-containing protein. (228 aa)
	CRE_18148	WD_REPEATS_REGION domain-containing protein. (164 aa)
	CRE_18125	WD_REPEATS_REGION domain-containing protein. (168 aa)
	CRE_01215	Uncharacterized protein. (76 aa)
	CRE_01216	Brix domain-containing protein. (436 aa)
	Cre-rps-28	CRE-RPS-28 protein. (65 aa)
	CRE_16413	Ribosomal_S7 domain-containing protein. (229 aa)
	CRE_31555	Uncharacterized protein. (422 aa)
	CRE_26887	Brix domain-containing protein. (269 aa)
	CRE_15202	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (161 aa)
	CRE_29285	Ribosomal_S7 domain-containing protein. (222 aa)
	CRE_01501	Uncharacterized protein. (1308 aa)
	CRE_13862	Uncharacterized protein. (493 aa)
	CRE_13863	Uncharacterized protein. (655 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01215	CRE_03827	E3N4S4	E3LXB7	Uncharacterized protein.	Uncharacterized protein.	0.801
CRE_01215	CRE_04612	E3N4S4	E3LZF1	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.514
CRE_01215	CRE_06776	E3N4S4	E3MP24	Uncharacterized protein.	Brix domain-containing protein.	0.806
CRE_01215	CRE_11364	E3N4S4	E3N0J8	Uncharacterized protein.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.824
CRE_01215	CRE_18124	E3N4S4	E3N372	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.400
CRE_01215	CRE_18125	E3N4S4	E3N374	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.400
CRE_01215	CRE_18148	E3N4S4	E3N373	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.400
CRE_01215	CRE_24023	E3N4S4	E3MGJ7	Uncharacterized protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.842
CRE_01215	CRE_24526	E3N4S4	E3MG34	Uncharacterized protein.	Brix domain-containing protein.	0.806
CRE_01215	CRE_24527	E3N4S4	E3MG35	Uncharacterized protein.	Brix domain-containing protein.	0.806
CRE_01215	CRE_26887	E3N4S4	E3NRB5	Uncharacterized protein.	Brix domain-containing protein.	0.806
CRE_01215	CRE_29632	E3N4S4	E3LUW5	Uncharacterized protein.	Uncharacterized protein.	0.624
CRE_01215	CRE_30102	E3N4S4	E3MYH3	Uncharacterized protein.	Brix domain-containing protein.	0.945
CRE_01215	Cre-eif-6	E3N4S4	E3N2P3	Uncharacterized protein.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. Involved in miRNA-mediated gene silencing.	0.827
CRE_01215	Cre-rpa-0	E3N4S4	E3LVY9	Uncharacterized protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.694
CRE_01215	Cre-rpl-25.1	E3N4S4	E3LEC5	Uncharacterized protein.	CRE-RPL-25.1 protein.	0.401
CRE_01215	Cre-rpl-25.2	E3N4S4	E3LYA2	Uncharacterized protein.	CRE-RPL-25.2 protein; Belongs to the universal ribosomal protein uL23 family.	0.401
CRE_01215	Cre-rpl-6	E3N4S4	E3LSX9	Uncharacterized protein.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.633
CRE_01215	Cre-rrbs-1	E3N4S4	E3LTJ6	Uncharacterized protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.856
CRE_01216	CRE_03827	E3N4S7	E3LXB7	Brix domain-containing protein.	Uncharacterized protein.	0.801