(105 nodes) Perikaryon network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-qui-1	CRE-QUI-1 protein. (1626 aa)
	Cre-rig-6	CRE-RIG-6 protein. (1216 aa)
	Cre-dyf-6	CRE-DYF-6 protein. (503 aa)
	CRE_06446	Uncharacterized protein. (355 aa)
	Cre-ced-9	CRE-CED-9 protein. (289 aa)
	Cre-ida-1	CRE-IDA-1 protein. (782 aa)
	CRE_04670	Uncharacterized protein; Belongs to the potassium channel family. (526 aa)
	Cre-strd-1	CRE-STRD-1 protein. (390 aa)
	Cre-kin-10	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (230 aa)
	Cre-gcy-28	Guanylate cyclase. (1229 aa)
	Cre-unc-25	CRE-UNC-25 protein. (509 aa)
	CRE_02911	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (711 aa)
	Cre-flp-14	CRE-FLP-14 protein. (144 aa)
	Cre-che-12	CRE-CHE-12 protein. (1296 aa)
	Cre-hmit-1.3	CRE-HMIT-1.3 protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (639 aa)
	Cre-atg-13	CRE-ATG-13 protein. (457 aa)
	CRE_25417	F-box domain-containing protein. (465 aa)
	Cre-mig-10	CRE-MIG-10 protein. (791 aa)
	Cre-vps-53	CRE-VPS-53 protein. (815 aa)
	Cre-usp-46	Ubiquitin carboxyl-terminal hydrolase. (439 aa)
	Cre-lgg-1	Protein lgg. (123 aa)
	Cre-daf-11	Guanylate cyclase. (1180 aa)
	Cre-kin-3	CRE-KIN-3 protein; Belongs to the protein kinase superfamily. (360 aa)
	Cre-ccpp-1	CRE-CCPP-1 protein. (1016 aa)
	Cre-egl-8	Phosphoinositide phospholipase C. (1437 aa)
	Cre-tdc-1	CRE-TDC-1 protein. (647 aa)
	CRE_01989	Uncharacterized protein. (78 aa)
	Cre-sphk-1	CRE-SPHK-1 protein. (482 aa)
	Cre-max-2	Non-specific serine/threonine protein kinase. (637 aa)
	CRE_00378	Uncharacterized protein. (101 aa)
	Cre-mig-13	CRE-MIG-13 protein. (455 aa)
	Cre-jkk-1	CRE-JKK-1 protein. (435 aa)
	Cre-ddr-1	CRE-DDR-1 protein. (768 aa)
	Cre-pak-1	Non-specific serine/threonine protein kinase. (570 aa)
	Cre-irk-1	CRE-IRK-1 protein. (544 aa)
	Cre-vps-52	CRE-VPS-52 protein. (706 aa)
	Cre-ddr-2	CRE-DDR-2 protein. (767 aa)
	Cre-srb-16	CRE-SRB-16 protein. (342 aa)
	Cre-srb-12	CRE-SRB-12 protein. (361 aa)
	CRE_11912	Uncharacterized protein. (419 aa)
	Cre-srb-13	CRE-SRB-13 protein. (368 aa)
	CRE_11915	Uncharacterized protein. (345 aa)
	Cre-srb-3	CRE-SRB-3 protein. (352 aa)
	Cre-gcy-12	Guanylate cyclase. (1689 aa)
	CRE_11823	Peptidase_M23 domain-containing protein. (335 aa)
	Cre-unc-43	CRE-UNC-43 protein. (862 aa)
	Cre-tax-6	Serine/threonine-protein phosphatase. (534 aa)
	Cre-egl-21	CRE-EGL-21 protein. (473 aa)
	Cre-arr-1	CRE-ARR-1 protein. (435 aa)
	Cre-rab-6.2	CRE-RAB-6.2 protein. (205 aa)
	Cre-pqn-34	CRE-PQN-34 protein. (1210 aa)
	CRE_16123	Uncharacterized protein. (340 aa)
	CRE_16115	Uncharacterized protein. (340 aa)
	Cre-glr-1	CRE-GLR-1 protein. (965 aa)
	Cre-uev-1	CRE-UEV-1 protein. (139 aa)
	Cre-cam-1	CRE-CAM-1 protein. (923 aa)
	Cre-rsks-1	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily. (544 aa)
	CRE_01005	RING-type domain-containing protein. (482 aa)
	CRE_01099	Uncharacterized protein. (103 aa)
	Cre-pef-1	Serine/threonine-protein phosphatase with EF-hands. (709 aa)
	CRE_04067	Uncharacterized protein. (104 aa)
	Cre-ttll-11	CRE-TTLL-11 protein. (721 aa)
	Cre-bec-1	CRE-BEC-1 protein. (374 aa)
	Cre-elt-1	CRE-ELT-1 protein. (412 aa)
	Cre-rab-28	CRE-RAB-28 protein. (267 aa)
	Cre-let-92	Serine/threonine-protein phosphatase. (333 aa)
	Cre-lin-10	CRE-LIN-10 protein. (1003 aa)
	Cre-dyf-5	CRE-DYF-5 protein; Belongs to the protein kinase superfamily. (451 aa)
	Cre-tac-1	CRE-TAC-1 protein. (336 aa)
	Cre-mak-2	CRE-MAK-2 protein; Belongs to the protein kinase superfamily. (434 aa)
	Cre-srx-43	CRE-SRX-43 protein. (319 aa)
	Cre-rab-6.1	CRE-RAB-6.1 protein. (205 aa)
	CRE_17419	Uncharacterized protein. (94 aa)
	Cre-cat-2	CRE-CAT-2 protein. (524 aa)
	CRE_24677	Uncharacterized protein. (851 aa)
	Cre-dmd-3	CRE-DMD-3 protein. (255 aa)
	CRE_16322	Protein kinase domain-containing protein. (140 aa)
	Cre-pkd-2	CRE-PKD-2 protein. (715 aa)
	Cre-ttx-3	CRE-TTX-3 protein. (460 aa)
	Cre-hmit-1.2	CRE-HMIT-1.2 protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (634 aa)
	Cre-jnk-1	Mitogen-activated protein kinase. (495 aa)
	Cre-pat-6	CRE-PAT-6 protein. (376 aa)
	CRE_04376	Uncharacterized protein. (242 aa)
	Cre-kpc-1	CRE-KPC-1 protein; Belongs to the peptidase S8 family. (739 aa)
	CRE_15034	Peptidase_M14 domain-containing protein. (242 aa)
	CRE_15035	Uncharacterized protein. (93 aa)
	CRE_03507	Uncharacterized protein. (185 aa)
	CRE_26848	Uncharacterized protein. (231 aa)
	Cre-nfyb-1	CRE-NFYB-1 protein. (212 aa)
	CRE_21021	C2 tensin-type domain-containing protein. (685 aa)
	CRE_25965	Uncharacterized protein. (66 aa)
	CRE_25966	PKD_channel domain-containing protein. (597 aa)
	CRE_25967	Uncharacterized protein. (132 aa)
	Cre-daf-18	CRE-DAF-18 protein. (432 aa)
	Cre-nfyc-1	CRE-NFYC-1 protein. (252 aa)
	CRE_16536	Uncharacterized protein. (107 aa)
	CRE_14408	WD_REPEATS_REGION domain-containing protein. (625 aa)
	CRE_23824	Mitogen-activated protein kinase. (463 aa)
	CRE_26891	Uncharacterized protein. (391 aa)
	CRE_26006	Uncharacterized protein. (260 aa)
	CRE_30322	Uncharacterized protein. (636 aa)
	CRE_07953	Serine/threonine-protein phosphatase. (331 aa)
	CRE_13219	PKD_channel domain-containing protein. (545 aa)
	ced-3	Cell death protein 3 subunit p13; Acts as a cysteine protease in controlling programmed cell death (apoptosis) by proteolytically activating or inactivating a wide range of substrates. Component of the egl-1, ced-9, ced-4 and ced-3 apoptotic signaling cascade required for the initiation of programmed cell death in cells fated to die during embryonic and postembryonic development. During oogenesis, required for germline apoptosis downstream of ced-9 and ced-4 but independently of egl-1. By cleaving and activating ced-8, promotes phosphatidylserine exposure on the surface of apoptotic ce [...] (508 aa)
	Cre-nsy-1	CRE-NSY-1 protein. (1506 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01005	Cre-kpc-1	E3MIB8	E3NJS1	RING-type domain-containing protein.	CRE-KPC-1 protein; Belongs to the peptidase S8 family.	0.762
CRE_01005	Cre-uev-1	E3MIB8	E3MFE2	RING-type domain-containing protein.	CRE-UEV-1 protein.	0.719
CRE_01989	CRE_02911	E3LGN9	E3LWM6	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.545
CRE_01989	CRE_26848	E3LGN9	E3NLG9	Uncharacterized protein.	Uncharacterized protein.	0.457
CRE_01989	Cre-cat-2	E3LGN9	E3N325	Uncharacterized protein.	CRE-CAT-2 protein.	0.941
CRE_01989	Cre-glr-1	E3LGN9	E3MD27	Uncharacterized protein.	CRE-GLR-1 protein.	0.579
CRE_01989	Cre-sphk-1	E3LGN9	E3LG95	Uncharacterized protein.	CRE-SPHK-1 protein.	0.532
CRE_01989	Cre-unc-25	E3LGN9	E3LX69	Uncharacterized protein.	CRE-UNC-25 protein.	0.628
CRE_02911	CRE_01989	E3LWM6	E3LGN9	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.545
CRE_02911	CRE_04670	E3LWM6	E3LYL8	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein; Belongs to the potassium channel family.	0.402
CRE_02911	CRE_07953	E3LWM6	E3NTI5	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Serine/threonine-protein phosphatase.	0.735
CRE_02911	CRE_16322	E3LWM6	E3N805	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Protein kinase domain-containing protein.	0.876
CRE_02911	CRE_16536	E3LWM6	E3NQD6	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.619
CRE_02911	CRE_21021	E3LWM6	E3NLZ7	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	C2 tensin-type domain-containing protein.	0.798
CRE_02911	CRE_23824	E3LWM6	E3NRT8	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Mitogen-activated protein kinase.	0.642
CRE_02911	Cre-arr-1	E3LWM6	E3MA36	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	CRE-ARR-1 protein.	0.730
CRE_02911	Cre-cam-1	E3LWM6	E3MHY0	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	CRE-CAM-1 protein.	0.552
CRE_02911	Cre-ccpp-1	E3LWM6	E3LMK4	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	CRE-CCPP-1 protein.	0.447
CRE_02911	Cre-ced-9	E3LWM6	E3LZ99	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	CRE-CED-9 protein.	0.675
CRE_02911	Cre-daf-18	E3LWM6	E3NMW7	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	CRE-DAF-18 protein.	0.798