(9 nodes) Late nucleophagy network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-atg-7	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy. (642 aa)
	CRE_08079	Protein kinase domain-containing protein. (410 aa)
	Cre-atg-9	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (921 aa)
	CRE_00281	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (342 aa)
	Cre-atg-2	CRE-ATG-2 protein. (2370 aa)
	CRE_05326	Uncharacterized protein. (70 aa)
	Cre-unc-51	CRE-UNC-51 protein. (903 aa)
	CRE_21114	Protein kinase domain-containing protein. (724 aa)
	CRE_17821	Uncharacterized protein. (1725 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00281	CRE_05326	E3LEA2	E3NR76	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.585
CRE_00281	CRE_08079	E3LEA2	E3M399	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.507
CRE_00281	CRE_17821	E3LEA2	E3MDI7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.950
CRE_00281	CRE_21114	E3LEA2	E3MES3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.613
CRE_00281	Cre-atg-2	E3LEA2	E3LDB4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	CRE-ATG-2 protein.	0.950
CRE_00281	Cre-atg-7	E3LEA2	E3M7N4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.585
CRE_00281	Cre-atg-9	E3LEA2	E3LHP2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.983
CRE_00281	Cre-unc-51	E3LEA2	E3MES4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	CRE-UNC-51 protein.	0.643
CRE_05326	CRE_00281	E3NR76	E3LEA2	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.585
CRE_05326	CRE_17821	E3NR76	E3MDI7	Uncharacterized protein.	Uncharacterized protein.	0.635
CRE_05326	CRE_21114	E3NR76	E3MES3	Uncharacterized protein.	Protein kinase domain-containing protein.	0.720
CRE_05326	Cre-atg-2	E3NR76	E3LDB4	Uncharacterized protein.	CRE-ATG-2 protein.	0.635
CRE_05326	Cre-atg-9	E3NR76	E3LHP2	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.916
CRE_05326	Cre-unc-51	E3NR76	E3MES4	Uncharacterized protein.	CRE-UNC-51 protein.	0.798
CRE_08079	CRE_00281	E3M399	E3LEA2	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.507
CRE_17821	CRE_00281	E3MDI7	E3LEA2	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.950
CRE_17821	CRE_05326	E3MDI7	E3NR76	Uncharacterized protein.	Uncharacterized protein.	0.635
CRE_17821	CRE_21114	E3MDI7	E3MES3	Uncharacterized protein.	Protein kinase domain-containing protein.	0.989
CRE_17821	Cre-atg-7	E3MDI7	E3M7N4	Uncharacterized protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.635
CRE_17821	Cre-atg-9	E3MDI7	E3LHP2	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.991