(16 nodes) Intermediate filament cytoskeleton organization network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-eps-8	CRE-EPS-8 protein. (733 aa)
	CRE_10608	F-box domain-containing protein. (260 aa)
	CRE_09761	Uncharacterized protein. (3300 aa)
	CRE_09763	Calponin-homology (CH) domain-containing protein. (184 aa)
	CRE_22630	Uncharacterized protein. (116 aa)
	CRE_08431	FBA_2 domain-containing protein. (316 aa)
	CRE_04232	FBA_2 domain-containing protein. (285 aa)
	CRE_04231	FBA_2 domain-containing protein. (317 aa)
	CRE_04184	Uncharacterized protein. (634 aa)
	CRE_00860	Uncharacterized protein. (1719 aa)
	CRE_02783	Uncharacterized protein. (731 aa)
	CRE_05338	SH3 domain-containing protein. (308 aa)
	CRE_20620	Uncharacterized protein. (1029 aa)
	Cre-vab-10	CRE-VAB-10 protein. (393 aa)
	CRE_24277	Uncharacterized protein. (380 aa)
	CRE_19537	Uncharacterized protein. (306 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_02783	CRE_09761	E3NV09	E3N9Y2	Uncharacterized protein.	Uncharacterized protein.	0.825
CRE_02783	CRE_20620	E3NV09	E3NN49	Uncharacterized protein.	Uncharacterized protein.	0.936
CRE_02783	Cre-vab-10	E3NV09	E3NMK1	Uncharacterized protein.	CRE-VAB-10 protein.	0.931
CRE_09761	CRE_02783	E3N9Y2	E3NV09	Uncharacterized protein.	Uncharacterized protein.	0.825
CRE_09761	CRE_20620	E3N9Y2	E3NN49	Uncharacterized protein.	Uncharacterized protein.	0.419
CRE_09761	Cre-vab-10	E3N9Y2	E3NMK1	Uncharacterized protein.	CRE-VAB-10 protein.	0.897
CRE_20620	CRE_02783	E3NN49	E3NV09	Uncharacterized protein.	Uncharacterized protein.	0.936
CRE_20620	CRE_09761	E3NN49	E3N9Y2	Uncharacterized protein.	Uncharacterized protein.	0.419
CRE_20620	Cre-vab-10	E3NN49	E3NMK1	Uncharacterized protein.	CRE-VAB-10 protein.	0.723
Cre-vab-10	CRE_02783	E3NMK1	E3NV09	CRE-VAB-10 protein.	Uncharacterized protein.	0.931
Cre-vab-10	CRE_09761	E3NMK1	E3N9Y2	CRE-VAB-10 protein.	Uncharacterized protein.	0.897
Cre-vab-10	CRE_20620	E3NMK1	E3NN49	CRE-VAB-10 protein.	Uncharacterized protein.	0.723