(36 nodes) Positive regulation of translation network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-rps-9	CRE-RPS-9 protein; Belongs to the universal ribosomal protein uS4 family. (189 aa)
	Cre-iff-2	Eukaryotic translation initiation factor 5A. (161 aa)
	CRE_02003	MIF4G domain-containing protein. (481 aa)
	CRE_28237	Uncharacterized protein. (421 aa)
	Cre-larp-5	CRE-LARP-5 protein. (705 aa)
	Cre-let-363	CRE-LET-363 protein; Belongs to the PI3/PI4-kinase family. (2743 aa)
	Cre-abcf-1	CRE-ABCF-1 protein. (622 aa)
	Cre-rpb-4	CRE-RPB-4 protein. (144 aa)
	Cre-iff-1	Eukaryotic translation initiation factor 5A. (162 aa)
	Cre-larp-1	CRE-LARP-1 protein. (1163 aa)
	CRE_03032	DUF155 domain-containing protein. (374 aa)
	CRE_04791	Uncharacterized protein. (523 aa)
	CRE_08117	Tr-type G domain-containing protein. (468 aa)
	Cre-daz-1	CRE-DAZ-1 protein. (466 aa)
	CRE_13901	KH domain-containing protein. (524 aa)
	Cre-ife-2	CRE-IFE-2 protein; Belongs to the eukaryotic initiation factor 4E family. (252 aa)
	CRE_19670	MIF4G domain-containing protein. (400 aa)
	CRE_21244	Fork-head domain-containing protein. (408 aa)
	CRE_21245	Uncharacterized protein. (62 aa)
	CRE_21246	Fork-head domain-containing protein. (499 aa)
	CRE_20694	Uncharacterized protein. (429 aa)
	CRE_22805	Smg4_UPF3 domain-containing protein. (514 aa)
	Cre-smg-4	CRE-SMG-4 protein. (252 aa)
	CRE_00957	Uncharacterized protein. (156 aa)
	CRE_01047	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (645 aa)
	CRE_31308	Fork-head domain-containing protein. (457 aa)
	Cre-pqn-27	CRE-PQN-27 protein. (521 aa)
	Cre-rpb-7	CRE-RPB-7 protein. (174 aa)
	CRE_08474	Fork-head domain-containing protein. (361 aa)
	Cre-ruvb-1	RuvB-like helicase; Belongs to the RuvB family. (477 aa)
	CRE_13706	Uncharacterized protein. (158 aa)
	Cre-fib-1	CRE-FIB-1 protein. (357 aa)
	CRE_24249	Fork-head domain-containing protein. (378 aa)
	Cre-nol-1	CRE-NOL-1 protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (677 aa)
	CRE_16572	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (435 aa)
	CRE_21104	Tr-type G domain-containing protein. (127 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00957	Cre-iff-1	E3MI19	E3LS88	Uncharacterized protein.	Eukaryotic translation initiation factor 5A.	0.429
CRE_00957	Cre-iff-2	E3MI19	E3LGF5	Uncharacterized protein.	Eukaryotic translation initiation factor 5A.	0.429
CRE_00957	Cre-rps-9	E3MI19	E3LFF0	Uncharacterized protein.	CRE-RPS-9 protein; Belongs to the universal ribosomal protein uS4 family.	0.896
CRE_01047	Cre-iff-1	E3MI21	E3LS88	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	Eukaryotic translation initiation factor 5A.	0.429
CRE_01047	Cre-iff-2	E3MI21	E3LGF5	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	Eukaryotic translation initiation factor 5A.	0.429
CRE_01047	Cre-rps-9	E3MI21	E3LFF0	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	CRE-RPS-9 protein; Belongs to the universal ribosomal protein uS4 family.	0.896
CRE_02003	CRE_08117	E3LGS1	E3M3H5	MIF4G domain-containing protein.	Tr-type G domain-containing protein.	0.856
CRE_02003	CRE_13706	E3LGS1	E3NBS8	MIF4G domain-containing protein.	Uncharacterized protein.	0.425
CRE_02003	CRE_22805	E3LGS1	E3MHB3	MIF4G domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.613
CRE_02003	Cre-abcf-1	E3LGS1	E3LNS4	MIF4G domain-containing protein.	CRE-ABCF-1 protein.	0.475
CRE_02003	Cre-daz-1	E3LGS1	E3M4M6	MIF4G domain-containing protein.	CRE-DAZ-1 protein.	0.787
CRE_02003	Cre-fib-1	E3LGS1	E3NCK3	MIF4G domain-containing protein.	CRE-FIB-1 protein.	0.710
CRE_02003	Cre-ife-2	E3LGS1	E3MAE4	MIF4G domain-containing protein.	CRE-IFE-2 protein; Belongs to the eukaryotic initiation factor 4E family.	0.950
CRE_02003	Cre-larp-1	E3LGS1	E3LSP5	MIF4G domain-containing protein.	CRE-LARP-1 protein.	0.741
CRE_02003	Cre-rps-9	E3LGS1	E3LFF0	MIF4G domain-containing protein.	CRE-RPS-9 protein; Belongs to the universal ribosomal protein uS4 family.	0.661
CRE_02003	Cre-smg-4	E3LGS1	E3MHM6	MIF4G domain-containing protein.	CRE-SMG-4 protein.	0.613
CRE_08117	CRE_02003	E3M3H5	E3LGS1	Tr-type G domain-containing protein.	MIF4G domain-containing protein.	0.856
CRE_08117	Cre-abcf-1	E3M3H5	E3LNS4	Tr-type G domain-containing protein.	CRE-ABCF-1 protein.	0.770
CRE_08117	Cre-daz-1	E3M3H5	E3M4M6	Tr-type G domain-containing protein.	CRE-DAZ-1 protein.	0.853
CRE_08117	Cre-fib-1	E3M3H5	E3NCK3	Tr-type G domain-containing protein.	CRE-FIB-1 protein.	0.422