(15 nodes) Nutrient reservoir activity network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-vit-6	CRE-VIT-6 protein. (1634 aa)
	CRE_00395	Uncharacterized protein. (1596 aa)
	CRE_00882	DUF1943 domain-containing protein. (409 aa)
	CRE_00880	DUF1943 domain-containing protein. (151 aa)
	CRE_00388	Uncharacterized protein. (1613 aa)
	Cre-vit-2	CRE-VIT-2 protein. (1620 aa)
	CRE_00475	Vitellogenin domain-containing protein. (480 aa)
	CRE_00950	Vitellogenin domain-containing protein. (370 aa)
	CRE_00509	Vitellogenin domain-containing protein. (763 aa)
	CRE_00508	VWFD domain-containing protein. (758 aa)
	Cre-vit-5	CRE-VIT-5 protein. (1599 aa)
	CRE_16597	Uncharacterized protein. (208 aa)
	CRE_19645	Uncharacterized protein. (137 aa)
	CRE_29400	WD_REPEATS_REGION domain-containing protein. (209 aa)
	CRE_23717	Uncharacterized protein. (1744 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00388	Cre-vit-6	E3LEV7	E3M6R6	Uncharacterized protein.	CRE-VIT-6 protein.	0.527
CRE_00395	Cre-vit-6	E3LEW7	E3M6R6	Uncharacterized protein.	CRE-VIT-6 protein.	0.527
CRE_00475	Cre-vit-6	E3LD16	E3M6R6	Vitellogenin domain-containing protein.	CRE-VIT-6 protein.	0.403
CRE_00508	Cre-vit-5	E3LCK5	E3LCE2	VWFD domain-containing protein.	CRE-VIT-5 protein.	0.609
CRE_00508	Cre-vit-6	E3LCK5	E3M6R6	VWFD domain-containing protein.	CRE-VIT-6 protein.	0.743
CRE_00509	Cre-vit-5	E3LCK6	E3LCE2	Vitellogenin domain-containing protein.	CRE-VIT-5 protein.	0.609
CRE_00509	Cre-vit-6	E3LCK6	E3M6R6	Vitellogenin domain-containing protein.	CRE-VIT-6 protein.	0.743
CRE_00880	Cre-vit-6	E3LEW0	E3M6R6	DUF1943 domain-containing protein.	CRE-VIT-6 protein.	0.403
CRE_00882	Cre-vit-6	E3LEW4	E3M6R6	DUF1943 domain-containing protein.	CRE-VIT-6 protein.	0.403
CRE_00950	Cre-vit-6	E3LD15	E3M6R6	Vitellogenin domain-containing protein.	CRE-VIT-6 protein.	0.403
Cre-vit-2	Cre-vit-5	E3LE68	E3LCE2	CRE-VIT-2 protein.	CRE-VIT-5 protein.	0.609
Cre-vit-2	Cre-vit-6	E3LE68	E3M6R6	CRE-VIT-2 protein.	CRE-VIT-6 protein.	0.743
Cre-vit-5	CRE_00508	E3LCE2	E3LCK5	CRE-VIT-5 protein.	VWFD domain-containing protein.	0.609
Cre-vit-5	CRE_00509	E3LCE2	E3LCK6	CRE-VIT-5 protein.	Vitellogenin domain-containing protein.	0.609
Cre-vit-5	Cre-vit-2	E3LCE2	E3LE68	CRE-VIT-5 protein.	CRE-VIT-2 protein.	0.609
Cre-vit-5	Cre-vit-6	E3LCE2	E3M6R6	CRE-VIT-5 protein.	CRE-VIT-6 protein.	0.792
Cre-vit-6	CRE_00388	E3M6R6	E3LEV7	CRE-VIT-6 protein.	Uncharacterized protein.	0.527
Cre-vit-6	CRE_00395	E3M6R6	E3LEW7	CRE-VIT-6 protein.	Uncharacterized protein.	0.527
Cre-vit-6	CRE_00475	E3M6R6	E3LD16	CRE-VIT-6 protein.	Vitellogenin domain-containing protein.	0.403
Cre-vit-6	CRE_00508	E3M6R6	E3LCK5	CRE-VIT-6 protein.	VWFD domain-containing protein.	0.743