6 items (Caenorhabditis remanei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-dbl-1	CRE-DBL-1 protein. (373 aa)
	Cre-sma-3	Dwarfin sma. (392 aa)
	Cre-sma-1	CRE-SMA-1 protein. (4172 aa)
	Cre-spe-10	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (352 aa)
	Cre-sma-5	CRE-SMA-5 protein. (520 aa)
	Cre-sma-4	Dwarfin sma. (594 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cre-dbl-1	Cre-sma-3	E3LTH3	E3LSQ5	CRE-DBL-1 protein.	Dwarfin sma.	0.917
Cre-dbl-1	Cre-sma-4	E3LTH3	E3LYU5	CRE-DBL-1 protein.	Dwarfin sma.	0.942
Cre-dbl-1	Cre-sma-5	E3LTH3	E3MAS6	CRE-DBL-1 protein.	CRE-SMA-5 protein.	0.690
Cre-sma-3	Cre-dbl-1	E3LSQ5	E3LTH3	Dwarfin sma.	CRE-DBL-1 protein.	0.917
Cre-sma-3	Cre-sma-4	E3LSQ5	E3LYU5	Dwarfin sma.	Dwarfin sma.	0.980
Cre-sma-3	Cre-sma-5	E3LSQ5	E3MAS6	Dwarfin sma.	CRE-SMA-5 protein.	0.591
Cre-sma-4	Cre-dbl-1	E3LYU5	E3LTH3	Dwarfin sma.	CRE-DBL-1 protein.	0.942
Cre-sma-4	Cre-sma-3	E3LYU5	E3LSQ5	Dwarfin sma.	Dwarfin sma.	0.980
Cre-sma-4	Cre-sma-5	E3LYU5	E3MAS6	Dwarfin sma.	CRE-SMA-5 protein.	0.591
Cre-sma-5	Cre-dbl-1	E3MAS6	E3LTH3	CRE-SMA-5 protein.	CRE-DBL-1 protein.	0.690
Cre-sma-5	Cre-sma-3	E3MAS6	E3LSQ5	CRE-SMA-5 protein.	Dwarfin sma.	0.591
Cre-sma-5	Cre-sma-4	E3MAS6	E3LYU5	CRE-SMA-5 protein.	Dwarfin sma.	0.591