(55 nodes) Receptor ligand activity network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_15862	Uncharacterized protein. (38 aa)
	CRE_07981	Uncharacterized protein. (179 aa)
	CRE_07982	Uncharacterized protein. (149 aa)
	Cre-nlp-38	CRE-NLP-38 protein. (116 aa)
	CRE_27315	CTCK domain-containing protein. (360 aa)
	CRE_27097	Uncharacterized protein. (822 aa)
	Cre-ins-15	CRE-INS-15 protein. (82 aa)
	Cre-ins-20	CRE-INS-20 protein. (113 aa)
	Cre-ins-3	CRE-INS-3 protein. (109 aa)
	Cre-ins-2	CRE-INS-2 protein. (113 aa)
	Cre-ins-23	CRE-INS-23 protein. (82 aa)
	Cre-dbl-1	CRE-DBL-1 protein. (373 aa)
	Cre-let-756	CRE-LET-756 protein; Belongs to the heparin-binding growth factors family. (586 aa)
	CRE_03689	Uncharacterized protein. (681 aa)
	Cre-mab-20	CRE-MAB-20 protein; Belongs to the semaphorin family. (659 aa)
	Cre-mom-2	CRE-MOM-2 protein. (366 aa)
	CRE_06550	Uncharacterized protein. (467 aa)
	Cre-tig-3	CRE-TIG-3 protein. (285 aa)
	Cre-ins-1	CRE-INS-1 protein. (107 aa)
	CRE_10074	EGF-like domain-containing protein. (276 aa)
	CRE_10075	EGF-like domain-containing protein. (268 aa)
	Cre-lin-3	CRE-LIN-3 protein. (533 aa)
	Cre-egl-17	CRE-EGL-17 protein; Belongs to the heparin-binding growth factors family. (216 aa)
	Cre-smp-1	CRE-SMP-1 protein; Belongs to the semaphorin family. (711 aa)
	Cre-smp-2	CRE-SMP-2 protein; Belongs to the semaphorin family. (657 aa)
	Cre-lin-44	CRE-LIN-44 protein. (360 aa)
	Cre-mif-1	CRE-MIF-1 protein. (117 aa)
	Cre-pvf-1	CRE-PVF-1 protein. (295 aa)
	CRE_25708	TGF_BETA_2 domain-containing protein. (361 aa)
	Cre-daf-7	CRE-DAF-7 protein. (363 aa)
	Cre-egl-20	CRE-EGL-20 protein. (393 aa)
	Cre-cwn-2	CRE-CWN-2 protein. (360 aa)
	CRE_12842	Uncharacterized protein. (186 aa)
	CRE_16835	Uncharacterized protein. (121 aa)
	CRE_24070	Uncharacterized protein. (225 aa)
	CRE_26729	Uncharacterized protein. (159 aa)
	Cre-nlp-15	CRE-NLP-15 protein. (141 aa)
	CRE_01255	Uncharacterized protein. (481 aa)
	CRE_01319	Homeobox domain-containing protein. (479 aa)
	CRE_01296	Uncharacterized protein. (411 aa)
	Cre-nlp-14	CRE-NLP-14 protein. (224 aa)
	Cre-flp-6	CRE-FLP-6 protein. (169 aa)
	Cre-unc-129	CRE-UNC-129 protein. (410 aa)
	CRE_31543	Uncharacterized protein. (87 aa)
	Cre-mif-3	CRE-MIF-3 protein. (146 aa)
	Cre-cwn-1	CRE-CWN-1 protein. (406 aa)
	CRE_23236	Uncharacterized protein. (171 aa)
	CRE_05322	EGF-like domain-containing protein. (385 aa)
	CRE_23818	Uncharacterized protein. (114 aa)
	CRE_23272	Uncharacterized protein. (88 aa)
	CRE_16580	Uncharacterized protein. (193 aa)
	gpb5	Putative glycoprotein hormone-beta5. (126 aa)
	CRE_00785	Uncharacterized protein. (105 aa)
	Cre-nlp-5	CRE-NLP-5 protein. (122 aa)
	Cre-tig-2	CRE-TIG-2 protein. (468 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_03689	CRE_27097	E3LXQ5	E3LQ78	Uncharacterized protein.	Uncharacterized protein.	0.526
CRE_05322	Cre-egl-17	E3NR72	E3MAC0	EGF-like domain-containing protein.	CRE-EGL-17 protein; Belongs to the heparin-binding growth factors family.	0.674
CRE_07981	CRE_16580	E3NWS7	E3NUH1	Uncharacterized protein.	Uncharacterized protein.	0.642
CRE_07981	CRE_31543	E3NWS7	E3NI49	Uncharacterized protein.	Uncharacterized protein.	0.505
CRE_07981	Cre-cwn-1	E3NWS7	E3NMD3	Uncharacterized protein.	CRE-CWN-1 protein.	0.541
CRE_07981	Cre-dbl-1	E3NWS7	E3LTH3	Uncharacterized protein.	CRE-DBL-1 protein.	0.454
CRE_07981	Cre-egl-20	E3NWS7	E3MLW6	Uncharacterized protein.	CRE-EGL-20 protein.	0.555
CRE_07981	Cre-lin-44	E3NWS7	E3MGF0	Uncharacterized protein.	CRE-LIN-44 protein.	0.705
CRE_07981	Cre-mom-2	E3NWS7	E3LZQ8	Uncharacterized protein.	CRE-MOM-2 protein.	0.452
CRE_07982	CRE_16580	E3NWS8	E3NUH1	Uncharacterized protein.	Uncharacterized protein.	0.536
CRE_07982	CRE_31543	E3NWS8	E3NI49	Uncharacterized protein.	Uncharacterized protein.	0.505
CRE_07982	Cre-cwn-1	E3NWS8	E3NMD3	Uncharacterized protein.	CRE-CWN-1 protein.	0.623
CRE_07982	Cre-dbl-1	E3NWS8	E3LTH3	Uncharacterized protein.	CRE-DBL-1 protein.	0.454
CRE_07982	Cre-egl-20	E3NWS8	E3MLW6	Uncharacterized protein.	CRE-EGL-20 protein.	0.535
CRE_07982	Cre-lin-44	E3NWS8	E3MGF0	Uncharacterized protein.	CRE-LIN-44 protein.	0.666
CRE_07982	Cre-mom-2	E3NWS8	E3LZQ8	Uncharacterized protein.	CRE-MOM-2 protein.	0.583
CRE_12842	CRE_24070	E3MQT9	E3MVN1	Uncharacterized protein.	Uncharacterized protein.	0.839
CRE_12842	CRE_26729	E3MQT9	E3MXW6	Uncharacterized protein.	Uncharacterized protein.	0.873
CRE_16580	CRE_07981	E3NUH1	E3NWS7	Uncharacterized protein.	Uncharacterized protein.	0.642
CRE_16580	CRE_07982	E3NUH1	E3NWS8	Uncharacterized protein.	Uncharacterized protein.	0.536