(18 nodes) Positive regulation of receptor-mediated endocytosis network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-wve-1	CRE-WVE-1 protein. (501 aa)
	Cre-cdc-42	CRE-CDC-42 protein. (191 aa)
	Cre-chc-1	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1698 aa)
	Cre-toca-2	CRE-TOCA-2 protein. (620 aa)
	Cre-abi-1	CRE-ABI-1 protein. (479 aa)
	Cre-wsp-1	CRE-WSP-1 protein. (762 aa)
	CRE_10175	WH1 domain-containing protein. (179 aa)
	CRE_10192	Uncharacterized protein. (285 aa)
	Cre-gex-2	CRE-GEX-2 protein. (1125 aa)
	Cre-toca-1	CRE-TOCA-1 protein. (642 aa)
	Cre-gex-3	CRE-GEX-3 protein. (1174 aa)
	CRE_12292	Uncharacterized protein. (440 aa)
	CRE_01476	CRIB domain-containing protein. (456 aa)
	CRE_01477	WH1 domain-containing protein. (179 aa)
	CRE_06241	AH domain-containing protein. (176 aa)
	CRE_19608	AH domain-containing protein. (272 aa)
	CRE_06257	AH domain-containing protein. (358 aa)
	CRE_20160	AH domain-containing protein. (89 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01476	CRE_10192	E3NR52	E3M6U5	CRIB domain-containing protein.	Uncharacterized protein.	0.849
CRE_01476	Cre-abi-1	E3NR52	E3LYY2	CRIB domain-containing protein.	CRE-ABI-1 protein.	0.900
CRE_01476	Cre-cdc-42	E3NR52	E3LRQ6	CRIB domain-containing protein.	CRE-CDC-42 protein.	0.957
CRE_01476	Cre-chc-1	E3NR52	E3LRX1	CRIB domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.872
CRE_01476	Cre-gex-2	E3NR52	E3M6U7	CRIB domain-containing protein.	CRE-GEX-2 protein.	0.849
CRE_01476	Cre-gex-3	E3NR52	E3MT32	CRIB domain-containing protein.	CRE-GEX-3 protein.	0.913
CRE_01476	Cre-toca-1	E3NR52	E3M9X1	CRIB domain-containing protein.	CRE-TOCA-1 protein.	0.944
CRE_01476	Cre-toca-2	E3NR52	E3LYH6	CRIB domain-containing protein.	CRE-TOCA-2 protein.	0.941
CRE_01476	Cre-wve-1	E3NR52	E3LNB3	CRIB domain-containing protein.	CRE-WVE-1 protein.	0.858
CRE_01477	CRE_10192	E3NR53	E3M6U5	WH1 domain-containing protein.	Uncharacterized protein.	0.778
CRE_01477	Cre-abi-1	E3NR53	E3LYY2	WH1 domain-containing protein.	CRE-ABI-1 protein.	0.900
CRE_01477	Cre-cdc-42	E3NR53	E3LRQ6	WH1 domain-containing protein.	CRE-CDC-42 protein.	0.903
CRE_01477	Cre-chc-1	E3NR53	E3LRX1	WH1 domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.872
CRE_01477	Cre-gex-2	E3NR53	E3M6U7	WH1 domain-containing protein.	CRE-GEX-2 protein.	0.778
CRE_01477	Cre-gex-3	E3NR53	E3MT32	WH1 domain-containing protein.	CRE-GEX-3 protein.	0.858
CRE_01477	Cre-toca-1	E3NR53	E3M9X1	WH1 domain-containing protein.	CRE-TOCA-1 protein.	0.905
CRE_01477	Cre-toca-2	E3NR53	E3LYH6	WH1 domain-containing protein.	CRE-TOCA-2 protein.	0.905
CRE_01477	Cre-wve-1	E3NR53	E3LNB3	WH1 domain-containing protein.	CRE-WVE-1 protein.	0.858
CRE_06241	CRE_20160	E3NT11	E3NV89	AH domain-containing protein.	AH domain-containing protein.	0.527
CRE_10175	CRE_10192	E3M6P9	E3M6U5	WH1 domain-containing protein.	Uncharacterized protein.	0.778