(28 nodes) Rhythmic process network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_17259	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (339 aa)
	Cre-nlp-37	CRE-NLP-37 protein. (89 aa)
	CRE_00806	Uncharacterized protein; Belongs to the arthropod CHH/MIH/GIH/VIH hormone family. (269 aa)
	Cre-atf-2	CRE-ATF-2 protein. (411 aa)
	CRE_28239	SCAPER_N domain-containing protein. (756 aa)
	CRE_28241	Atx10homo_assoc domain-containing protein. (519 aa)
	CRE_25417	F-box domain-containing protein. (465 aa)
	CRE_11052	Uncharacterized protein; Belongs to the arthropod CHH/MIH/GIH/VIH hormone family. (105 aa)
	CRE_17260	Protein kinase domain-containing protein. (347 aa)
	CRE_15991	Nuclear receptor domain-containing protein. (85 aa)
	Cre-flr-4	CRE-FLR-4 protein. (585 aa)
	Cre-kin-20	CRE-KIN-20 protein. (510 aa)
	Cre-pdf-1	CRE-PDF-1 protein. (86 aa)
	Cre-lin-42	CRE-LIN-42 protein. (633 aa)
	CRE_22353	Protein kinase domain-containing protein. (319 aa)
	CRE_22354	Protein kinase domain-containing protein. (341 aa)
	Cre-flr-1	CRE-FLR-1 protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family. (632 aa)
	CRE_04113	Uncharacterized protein. (718 aa)
	CRE_29072	Uncharacterized protein; Belongs to the arthropod CHH/MIH/GIH/VIH hormone family. (107 aa)
	CRE_14867	BTB domain-containing protein. (300 aa)
	CRE_14868	F5/8 type C domain-containing protein. (273 aa)
	CRE_24654	Uncharacterized protein. (589 aa)
	CRE_19970	Uncharacterized protein. (1097 aa)
	CRE_23073	Protein kinase domain-containing protein. (298 aa)
	CRE_05210	Protein kinase domain-containing protein. (281 aa)
	CRE_05215	Protein kinase domain-containing protein. (531 aa)
	CRE_13884	Uncharacterized protein. (177 aa)
	CRE_07200	F5/8 type C domain-containing protein. (156 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_04113	CRE_15991	E3MMZ2	E3MB68	Uncharacterized protein.	Nuclear receptor domain-containing protein.	0.428
CRE_05210	CRE_15991	E3NEA3	E3MB68	Protein kinase domain-containing protein.	Nuclear receptor domain-containing protein.	0.639
CRE_05215	CRE_15991	E3NEB0	E3MB68	Protein kinase domain-containing protein.	Nuclear receptor domain-containing protein.	0.639
CRE_07200	CRE_14867	E3NWP2	E3N1T2	F5/8 type C domain-containing protein.	BTB domain-containing protein.	0.899
CRE_14867	CRE_07200	E3N1T2	E3NWP2	BTB domain-containing protein.	F5/8 type C domain-containing protein.	0.899
CRE_14867	CRE_14868	E3N1T2	E3N1T4	BTB domain-containing protein.	F5/8 type C domain-containing protein.	0.900
CRE_14868	CRE_14867	E3N1T4	E3N1T2	F5/8 type C domain-containing protein.	BTB domain-containing protein.	0.900
CRE_15991	CRE_04113	E3MB68	E3MMZ2	Nuclear receptor domain-containing protein.	Uncharacterized protein.	0.428
CRE_15991	CRE_05210	E3MB68	E3NEA3	Nuclear receptor domain-containing protein.	Protein kinase domain-containing protein.	0.639
CRE_15991	CRE_05215	E3MB68	E3NEB0	Nuclear receptor domain-containing protein.	Protein kinase domain-containing protein.	0.639
CRE_15991	Cre-lin-42	E3MB68	E3MDP6	Nuclear receptor domain-containing protein.	CRE-LIN-42 protein.	0.465
CRE_17259	Cre-lin-42	E3MAE2	E3MDP6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	CRE-LIN-42 protein.	0.938
CRE_17260	Cre-lin-42	E3MAE3	E3MDP6	Protein kinase domain-containing protein.	CRE-LIN-42 protein.	0.938
CRE_22353	Cre-lin-42	E3MEA0	E3MDP6	Protein kinase domain-containing protein.	CRE-LIN-42 protein.	0.938
CRE_22354	Cre-lin-42	E3MEA1	E3MDP6	Protein kinase domain-containing protein.	CRE-LIN-42 protein.	0.938
CRE_23073	Cre-lin-42	E3N9I3	E3MDP6	Protein kinase domain-containing protein.	CRE-LIN-42 protein.	0.938
Cre-atf-2	Cre-lin-42	E3LFY0	E3MDP6	CRE-ATF-2 protein.	CRE-LIN-42 protein.	0.859
Cre-flr-1	Cre-flr-4	E3MJH6	E3MCA5	CRE-FLR-1 protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	CRE-FLR-4 protein.	0.844
Cre-flr-4	Cre-flr-1	E3MCA5	E3MJH6	CRE-FLR-4 protein.	CRE-FLR-1 protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.844
Cre-kin-20	Cre-lin-42	E3MCC7	E3MDP6	CRE-KIN-20 protein.	CRE-LIN-42 protein.	0.981