(28 nodes) Developmental cell growth network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-rab-7	CRE-RAB-7 protein. (245 aa)
	Cre-kal-1	CRE-KAL-1 protein. (710 aa)
	Cre-lrk-1	CRE-LRK-1 protein. (2095 aa)
	CRE_28094	ANK_REP_REGION domain-containing protein. (275 aa)
	Cre-unc-130	CRE-UNC-130 protein. (335 aa)
	CRE_00281	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (342 aa)
	Cre-mig-2	CRE-MIG-2 protein. (195 aa)
	CRE_04841	Uncharacterized protein. (466 aa)
	Cre-gsa-1	CRE-GSA-1 protein. (375 aa)
	Cre-acy-4	Adenylate cyclase; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling. (1009 aa)
	Cre-klc-2	CRE-KLC-2 protein. (559 aa)
	Cre-wve-1	CRE-WVE-1 protein. (501 aa)
	CRE_27979	Uncharacterized protein. (487 aa)
	Cre-glp-1	CRE-GLP-1 protein. (1308 aa)
	Cre-dmd-3	CRE-DMD-3 protein. (255 aa)
	CRE_01134	Uncharacterized protein. (356 aa)
	Cre-emo-1	CRE-EMO-1 protein. (110 aa)
	Cre-gex-3	CRE-GEX-3 protein. (1174 aa)
	Cre-lag-1	CRE-LAG-1 protein. (686 aa)
	Cre-unc-51	CRE-UNC-51 protein. (903 aa)
	CRE_21114	Protein kinase domain-containing protein. (724 aa)
	Cre-syg-2	CRE-SYG-2 protein. (1277 aa)
	Cre-dyf-7	CRE-DYF-7 protein. (448 aa)
	CRE_13265	Uncharacterized protein. (387 aa)
	CRE_11014	Uncharacterized protein. (110 aa)
	CRE_08079	Protein kinase domain-containing protein. (410 aa)
	Cre-syg-1	CRE-SYG-1 protein. (744 aa)
	Cre-dgn-1	CRE-DGN-1 protein. (585 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00281	CRE_08079	E3LEA2	E3M399	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.507
CRE_00281	CRE_21114	E3LEA2	E3MES3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.613
CRE_00281	CRE_28094	E3LEA2	E3LM93	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	ANK_REP_REGION domain-containing protein.	0.655
CRE_00281	Cre-lrk-1	E3LEA2	E3LM95	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	CRE-LRK-1 protein.	0.655
CRE_00281	Cre-mig-2	E3LEA2	E3M255	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	CRE-MIG-2 protein.	0.568
CRE_00281	Cre-unc-51	E3LEA2	E3MES4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	CRE-UNC-51 protein.	0.643
CRE_08079	CRE_00281	E3M399	E3LEA2	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.507
CRE_08079	CRE_28094	E3M399	E3LM93	Protein kinase domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.481
CRE_08079	Cre-lrk-1	E3M399	E3LM95	Protein kinase domain-containing protein.	CRE-LRK-1 protein.	0.481
CRE_08079	Cre-mig-2	E3M399	E3M255	Protein kinase domain-containing protein.	CRE-MIG-2 protein.	0.811
CRE_21114	CRE_00281	E3MES3	E3LEA2	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.613
CRE_21114	CRE_28094	E3MES3	E3LM93	Protein kinase domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.655
CRE_21114	Cre-lrk-1	E3MES3	E3LM95	Protein kinase domain-containing protein.	CRE-LRK-1 protein.	0.655
CRE_21114	Cre-mig-2	E3MES3	E3M255	Protein kinase domain-containing protein.	CRE-MIG-2 protein.	0.568
CRE_27979	Cre-glp-1	E3NSN3	E3NFX9	Uncharacterized protein.	CRE-GLP-1 protein.	0.995
CRE_28094	CRE_00281	E3LM93	E3LEA2	ANK_REP_REGION domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.655
CRE_28094	CRE_08079	E3LM93	E3M399	ANK_REP_REGION domain-containing protein.	Protein kinase domain-containing protein.	0.481
CRE_28094	CRE_21114	E3LM93	E3MES3	ANK_REP_REGION domain-containing protein.	Protein kinase domain-containing protein.	0.655
CRE_28094	Cre-gex-3	E3LM93	E3MT32	ANK_REP_REGION domain-containing protein.	CRE-GEX-3 protein.	0.600
CRE_28094	Cre-glp-1	E3LM93	E3NFX9	ANK_REP_REGION domain-containing protein.	CRE-GLP-1 protein.	0.483