(9 nodes) Hermaphrodite genitalia morphogenesis network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-ipp-5	CRE-IPP-5 protein. (451 aa)
	CRE_05356	Ion_trans domain-containing protein. (309 aa)
	Cre-lfe-2	Kinase; Belongs to the inositol phosphokinase (IPK) family. (464 aa)
	Cre-pat-4	CRE-PAT-4 protein. (352 aa)
	Cre-unc-112	CRE-UNC-112 protein. (720 aa)
	Cre-itr-1	CRE-ITR-1 protein. (2951 aa)
	Cre-cye-1	CRE-CYE-1 protein; Belongs to the cyclin family. (550 aa)
	Cre-cogc-1	CRE-COGC-1 protein. (522 aa)
	Cre-cdk-2	CRE-CDK-2 protein; Belongs to the protein kinase superfamily. (337 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_05356	Cre-ipp-5	E3NTV5	E3LDR5	Ion_trans domain-containing protein.	CRE-IPP-5 protein.	0.650
CRE_05356	Cre-lfe-2	E3NTV5	E3MX58	Ion_trans domain-containing protein.	Kinase; Belongs to the inositol phosphokinase (IPK) family.	0.699
Cre-cdk-2	Cre-cye-1	E3LM15	E3LMS7	CRE-CDK-2 protein; Belongs to the protein kinase superfamily.	CRE-CYE-1 protein; Belongs to the cyclin family.	0.999
Cre-cdk-2	Cre-pat-4	E3LM15	E3MSP7	CRE-CDK-2 protein; Belongs to the protein kinase superfamily.	CRE-PAT-4 protein.	0.431
Cre-cye-1	Cre-cdk-2	E3LMS7	E3LM15	CRE-CYE-1 protein; Belongs to the cyclin family.	CRE-CDK-2 protein; Belongs to the protein kinase superfamily.	0.999
Cre-ipp-5	CRE_05356	E3LDR5	E3NTV5	CRE-IPP-5 protein.	Ion_trans domain-containing protein.	0.650
Cre-ipp-5	Cre-itr-1	E3LDR5	E3M7H8	CRE-IPP-5 protein.	CRE-ITR-1 protein.	0.650
Cre-ipp-5	Cre-lfe-2	E3LDR5	E3MX58	CRE-IPP-5 protein.	Kinase; Belongs to the inositol phosphokinase (IPK) family.	0.993
Cre-itr-1	Cre-ipp-5	E3M7H8	E3LDR5	CRE-ITR-1 protein.	CRE-IPP-5 protein.	0.650
Cre-itr-1	Cre-lfe-2	E3M7H8	E3MX58	CRE-ITR-1 protein.	Kinase; Belongs to the inositol phosphokinase (IPK) family.	0.699
Cre-lfe-2	CRE_05356	E3MX58	E3NTV5	Kinase; Belongs to the inositol phosphokinase (IPK) family.	Ion_trans domain-containing protein.	0.699
Cre-lfe-2	Cre-ipp-5	E3MX58	E3LDR5	Kinase; Belongs to the inositol phosphokinase (IPK) family.	CRE-IPP-5 protein.	0.993
Cre-lfe-2	Cre-itr-1	E3MX58	E3M7H8	Kinase; Belongs to the inositol phosphokinase (IPK) family.	CRE-ITR-1 protein.	0.699
Cre-pat-4	Cre-cdk-2	E3MSP7	E3LM15	CRE-PAT-4 protein.	CRE-CDK-2 protein; Belongs to the protein kinase superfamily.	0.431
Cre-pat-4	Cre-unc-112	E3MSP7	E3MNB9	CRE-PAT-4 protein.	CRE-UNC-112 protein.	0.999
Cre-unc-112	Cre-pat-4	E3MNB9	E3MSP7	CRE-UNC-112 protein.	CRE-PAT-4 protein.	0.999