(127 nodes) Cilium assembly network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_00849	Uncharacterized protein. (429 aa)
	Cre-fkh-2	CRE-FKH-2 protein. (278 aa)
	CRE_02156	UVR domain-containing protein. (732 aa)
	CRE_02191	C2-C2_1 domain-containing protein. (1171 aa)
	CRE_02192	Uncharacterized protein. (412 aa)
	Cre-nph-1	CRE-NPH-1 protein. (480 aa)
	CRE_01816	Uncharacterized protein. (163 aa)
	CRE_02012	Uncharacterized protein. (176 aa)
	CRE_01648	TPR_REGION domain-containing protein. (191 aa)
	CRE_09048	Uncharacterized protein. (346 aa)
	CRE_18921	Uncharacterized protein. (657 aa)
	CRE_18839	Uncharacterized protein. (611 aa)
	CRE_18840	ARL2_Bind_BART domain-containing protein. (96 aa)
	CRE_28039	AdoMet activation domain-containing protein. (1711 aa)
	CRE_28442	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (456 aa)
	Cre-bbs-9	CRE-BBS-9 protein. (799 aa)
	Cre-daf-11	Guanylate cyclase. (1180 aa)
	CRE_27335	Uncharacterized protein. (152 aa)
	CRE_27336	Uncharacterized protein. (343 aa)
	Cre-nph-4	CRE-NPH-4 protein. (760 aa)
	Cre-osm-6	CRE-OSM-6 protein. (485 aa)
	Cre-che-11	CRE-CHE-11 protein. (922 aa)
	CRE_27368	Uncharacterized protein. (544 aa)
	CRE_27060	Uncharacterized protein. (339 aa)
	CRE_27061	Uncharacterized protein. (342 aa)
	Cre-dyf-13	CRE-DYF-13 protein. (578 aa)
	CRE_26239	Uncharacterized protein. (643 aa)
	Cre-ift-74	CRE-IFT-74 protein. (628 aa)
	CRE_26311	Uncharacterized protein. (575 aa)
	CRE_26312	Uncharacterized protein. (146 aa)
	CRE_26104	Uncharacterized protein. (924 aa)
	CRE_25560	TPR_REGION domain-containing protein. (462 aa)
	CRE_25325	Uncharacterized protein. (621 aa)
	CRE_25446	DUF667 domain-containing protein. (203 aa)
	CRE_25159	Uncharacterized protein. (516 aa)
	Cre-bbs-8	CRE-BBS-8 protein. (506 aa)
	Cre-che-12	CRE-CHE-12 protein. (1296 aa)
	Cre-rop-1	CRE-ROP-1 protein. (644 aa)
	Cre-odr-3	CRE-ODR-3 protein. (356 aa)
	Cre-rme-1	CRE-RME-1 protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (570 aa)
	CRE_29636	Uncharacterized protein. (435 aa)
	Cre-che-13	CRE-CHE-13 protein. (308 aa)
	CRE_29840	Uncharacterized protein. (138 aa)
	Cre-arl-13	CRE-ARL-13 protein. (369 aa)
	Cre-unc-119	CRE-UNC-119 protein. (217 aa)
	CRE_04848	Uncharacterized protein. (662 aa)
	Cre-dyf-2	CRE-DYF-2 protein. (700 aa)
	Cre-bbs-5	CRE-BBS-5 protein. (382 aa)
	CRE_05705	Uncharacterized protein. (127 aa)
	Cre-srx-135	CRE-SRX-135 protein. (312 aa)
	Cre-osm-5	CRE-OSM-5 protein. (830 aa)
	Cre-dyf-6	CRE-DYF-6 protein. (503 aa)
	Cre-cdc-14	CRE-CDC-14 protein. (767 aa)
	CRE_11834	Uncharacterized protein. (326 aa)
	Cre-bbs-2	Bardet-Biedl syndrome 2 protein homolog. (730 aa)
	Cre-osm-3	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (702 aa)
	CRE_09983	Rhodanese domain-containing protein. (182 aa)
	CRE_12700	Uncharacterized protein. (460 aa)
	CRE_13964	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (474 aa)
	Cre-mksr-1	CRE-MKSR-1 protein. (230 aa)
	Cre-dyf-11	CRE-DYF-11 protein. (551 aa)
	Cre-che-2	CRE-CHE-2 protein. (760 aa)
	CRE_17253	Uncharacterized protein. (501 aa)
	Cre-arl-6	CRE-ARL-6 protein. (190 aa)
	Cre-bbs-1	CRE-BBS-1 protein. (596 aa)
	Cre-osm-12	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. (736 aa)
	CRE_09491	Uncharacterized protein. (416 aa)
	Cre-osm-1	CRE-OSM-1 protein. (1722 aa)
	CRE_03300	Uncharacterized protein. (127 aa)
	Cre-xbx-1	CRE-XBX-1 protein. (416 aa)
	CRE_11225	Uncharacterized protein. (701 aa)
	CRE_11226	Uncharacterized protein. (406 aa)
	Cre-str-27	CRE-STR-27 protein. (348 aa)
	CRE_11162	Uncharacterized protein. (147 aa)
	CRE_11163	Uncharacterized protein. (347 aa)
	CRE_12911	Uncharacterized protein. (608 aa)
	Cre-daf-10	CRE-DAF-10 protein. (1205 aa)
	CRE_15185	WD_REPEATS_REGION domain-containing protein. (239 aa)
	CRE_11553	Uncharacterized protein. (460 aa)
	CRE_26861	G_PROTEIN_RECEP_F1_2 domain-containing protein. (320 aa)
	CRE_26860	Thioredoxin domain-containing protein. (343 aa)
	CRE_03514	Uncharacterized protein. (105 aa)
	CRE_03513	Uncharacterized protein. (75 aa)
	CRE_29402	Uncharacterized protein. (249 aa)
	CRE_31617	BBS2_C domain-containing protein. (124 aa)
	CRE_31616	Uncharacterized protein. (608 aa)
	CRE_26006	Uncharacterized protein. (260 aa)
	CRE_15102	Uncharacterized protein. (119 aa)
	CRE_05334	Fork-head domain-containing protein. (246 aa)
	CRE_20133	Uncharacterized protein. (454 aa)
	CRE_11595	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (509 aa)
	Cre-ift-81	CRE-IFT-81 protein. (638 aa)
	CRE_20593	DUF4457 domain-containing protein. (155 aa)
	CRE_17637	Uncharacterized protein. (303 aa)
	CRE_17636	Uncharacterized protein. (238 aa)
	Cre-mks-1	CRE-MKS-1 protein. (497 aa)
	CRE_26811	C2 domain-containing protein. (1196 aa)
	CRE_24258	Uncharacterized protein. (187 aa)
	CRE_18264	G_PROTEIN_RECEP_F1_2 domain-containing protein. (335 aa)
	CRE_18263	Thioredoxin domain-containing protein. (342 aa)
	CRE_20565	Uncharacterized protein. (402 aa)
	Cre-dyf-3	CRE-DYF-3 protein. (394 aa)
	CRE_10668	G_PROTEIN_RECEP_F1_2 domain-containing protein. (284 aa)
	Cre-srx-12	CRE-SRX-12 protein. (313 aa)
	Cre-srx-14	CRE-SRX-14 protein. (326 aa)
	Cre-srx-13	CRE-SRX-13 protein. (340 aa)
	CRE_07800	Uncharacterized protein. (1381 aa)
	Cre-ifta-1	CRE-IFTA-1 protein. (1250 aa)
	CRE_30421	Uncharacterized protein. (244 aa)
	CRE_30397	Uncharacterized protein. (303 aa)
	Cre-pes-1	CRE-PES-1 protein. (245 aa)
	Cre-mksr-2	CRE-MKSR-2 protein. (175 aa)
	CRE_23714	Uncharacterized protein. (151 aa)
	CRE_19978	Uncharacterized protein. (165 aa)
	CRE_19977	Uncharacterized protein. (190 aa)
	CRE_06015	Uncharacterized protein. (447 aa)
	Cre-hyls-1	CRE-HYLS-1 protein. (343 aa)
	Cre-unc-101	CRE-UNC-101 protein; Belongs to the adaptor complexes medium subunit family. (422 aa)
	Cre-dyf-14	CRE-DYF-14 protein. (1985 aa)
	CRE_19302	WD_REPEATS_REGION domain-containing protein. (1021 aa)
	CRE_21948	Uncharacterized protein. (409 aa)
	CRE_18002	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (485 aa)
	Cre-dyf-5	CRE-DYF-5 protein; Belongs to the protein kinase superfamily. (451 aa)
	Cre-che-3	CRE-CHE-3 protein. (4175 aa)
	Cre-klp-20	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (752 aa)
	CRE_16880	C2H2-type domain-containing protein. (154 aa)
	Cre-rab-28	CRE-RAB-28 protein. (267 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00849	CRE_25446	E3LEP2	E3LT79	Uncharacterized protein.	DUF667 domain-containing protein.	0.813
CRE_00849	CRE_25560	E3LEP2	E3LSA6	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.569
CRE_00849	Cre-bbs-8	E3LEP2	E3LTH5	Uncharacterized protein.	CRE-BBS-8 protein.	0.452
CRE_00849	Cre-dyf-5	E3LEP2	E3MT85	Uncharacterized protein.	CRE-DYF-5 protein; Belongs to the protein kinase superfamily.	0.499
CRE_00849	Cre-ift-81	E3LEP2	E3LE29	Uncharacterized protein.	CRE-IFT-81 protein.	0.505
CRE_00849	Cre-mks-1	E3LEP2	E3NJN3	Uncharacterized protein.	CRE-MKS-1 protein.	0.416
CRE_00849	Cre-osm-5	E3LEP2	E3M290	Uncharacterized protein.	CRE-OSM-5 protein.	0.452
CRE_01816	CRE_02191	E3LFM4	E3LFK3	Uncharacterized protein.	C2-C2_1 domain-containing protein.	0.968
CRE_01816	CRE_02192	E3LFM4	E3LFK5	Uncharacterized protein.	Uncharacterized protein.	0.885
CRE_01816	CRE_03300	E3LFM4	E3MMI4	Uncharacterized protein.	Uncharacterized protein.	0.531
CRE_01816	CRE_06015	E3LFM4	E3N6H9	Uncharacterized protein.	Uncharacterized protein.	0.596
CRE_01816	CRE_13964	E3LFM4	E3M909	Uncharacterized protein.	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.737
CRE_01816	CRE_17636	E3LFM4	E3NJP8	Uncharacterized protein.	Uncharacterized protein.	0.576
CRE_01816	CRE_17637	E3LFM4	E3NJQ1	Uncharacterized protein.	Uncharacterized protein.	0.576
CRE_01816	CRE_18002	E3LFM4	E3MTR0	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.609
CRE_01816	CRE_20565	E3LFM4	E3NFD9	Uncharacterized protein.	Uncharacterized protein.	0.765
CRE_01816	CRE_21948	E3LFM4	E3MUH9	Uncharacterized protein.	Uncharacterized protein.	0.794
CRE_01816	CRE_23714	E3LFM4	E3N9C0	Uncharacterized protein.	Uncharacterized protein.	0.731
CRE_01816	CRE_25560	E3LFM4	E3LSA6	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.648
CRE_01816	CRE_26104	E3LFM4	E3LRR6	Uncharacterized protein.	Uncharacterized protein.	0.565