(79 nodes) Collagen-containing extracellular matrix network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_24984	I-set domain-containing protein. (417 aa)
	CRE_24983	Uncharacterized protein. (431 aa)
	Cre-unc-52	CRE-UNC-52 protein. (3425 aa)
	Cre-hse-5	CRE-HSE-5 protein. (645 aa)
	CRE_20322	Uncharacterized protein. (1199 aa)
	CRE_16676	Uncharacterized protein. (1247 aa)
	CRE_16675	Uncharacterized protein. (1105 aa)
	Cre-him-4	CRE-HIM-4 protein. (2924 aa)
	Cre-col-19	CRE-COL-19 protein. (297 aa)
	Cre-pat-3	Integrin beta; Belongs to the integrin beta chain family. (829 aa)
	CRE_11006	Uncharacterized protein. (425 aa)
	Cre-epi-1	CRE-EPI-1 protein. (3753 aa)
	CRE_11063	Fibrinogen C-terminal domain-containing protein. (457 aa)
	CRE_11823	Peptidase_M23 domain-containing protein. (335 aa)
	CRE_08204	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (470 aa)
	Cre-pxn-2	CRE-PXN-2 protein. (1360 aa)
	CRE_06354	Uncharacterized protein. (778 aa)
	Cre-cut-6	CRE-CUT-6 protein. (576 aa)
	CRE_03910	Uncharacterized protein. (2551 aa)
	Cre-dpy-7	CRE-DPY-7 protein. (334 aa)
	Cre-lam-2	CRE-LAM-2 protein. (1550 aa)
	CRE_00095	Uncharacterized protein. (86 aa)
	CRE_00574	Uncharacterized protein. (566 aa)
	Cre-unc-6	CRE-UNC-6 protein. (612 aa)
	Cre-lon-2	CRE-LON-2 protein. (508 aa)
	Cre-lec-1	Galectin. (284 aa)
	Cre-cut-1	CRE-CUT-1 protein. (441 aa)
	Cre-bli-1	CRE-BLI-1 protein. (944 aa)
	Cre-rol-6	CRE-ROL-6 protein. (367 aa)
	CRE_18942	Uncharacterized protein. (439 aa)
	Cre-mig-6	CRE-MIG-6 protein. (1553 aa)
	CRE_27249	Uncharacterized protein. (104 aa)
	CRE_27250	Uncharacterized protein. (223 aa)
	CRE_26954	Uncharacterized protein. (387 aa)
	CRE_26999	Uncharacterized protein. (260 aa)
	Cre-col-158	CRE-COL-158 protein. (345 aa)
	Cre-lon-3	CRE-LON-3 protein. (324 aa)
	Cre-sqt-3	CRE-SQT-3 protein. (301 aa)
	Cre-spon-1	CRE-SPON-1 protein. (831 aa)
	Cre-emb-9	CRE-EMB-9 protein. (1804 aa)
	Cre-nid-1	CRE-NID-1 protein. (1609 aa)
	Cre-dpy-5	CRE-DPY-5 protein. (284 aa)
	Cre-cle-1	CRE-CLE-1 protein. (1235 aa)
	Cre-lam-3	CRE-LAM-3 protein. (3122 aa)
	CRE_02982	Uncharacterized protein. (513 aa)
	Cre-lam-1	CRE-LAM-1 protein. (1264 aa)
	CRE_07192	Uncharacterized protein. (456 aa)
	CRE_20619	Pep_M12B_propep domain-containing protein. (281 aa)
	CRE_23795	Fibrinogen C-terminal domain-containing protein. (453 aa)
	CRE_21031	Uncharacterized protein. (1062 aa)
	Cre-dpy-13	CRE-DPY-13 protein. (304 aa)
	CRE_27943	GON domain-containing protein. (382 aa)
	CRE_15812	Fibulin-1; Belongs to the fibulin family. (867 aa)
	CRE_15813	Uncharacterized protein. (175 aa)
	CRE_17681	Fibrinogen C-terminal domain-containing protein. (390 aa)
	CRE_02662	Fibrinogen C-terminal domain-containing protein. (191 aa)
	CRE_14974	Uncharacterized protein. (228 aa)
	Cre-ost-1	CRE-OST-1 protein. (264 aa)
	CRE_01349	Fibulin-1; Belongs to the fibulin family. (653 aa)
	CRE_01348	Anaphylatoxin-like domain-containing protein. (184 aa)
	CRE_30392	Uncharacterized protein. (242 aa)
	Cre-elks-1	CRE-ELKS-1 protein. (868 aa)
	Cre-cpz-1	CRE-CPZ-1 protein; Belongs to the peptidase C1 family. (306 aa)
	CRE_14913	ShKT domain-containing protein. (674 aa)
	CRE_27809	Uncharacterized protein. (76 aa)
	CRE_16296	Fibrinogen C-terminal domain-containing protein. (363 aa)
	CRE_12166	Uncharacterized protein. (922 aa)
	CRE_22899	Laminin N-terminal domain-containing protein. (262 aa)
	Cre-col-153	CRE-COL-153 protein. (328 aa)
	CRE_13469	Uncharacterized protein. (1815 aa)
	Cre-mig-17	CRE-MIG-17 protein. (494 aa)
	CRE_07654	Uncharacterized protein. (604 aa)
	CRE_07653	Uncharacterized protein. (193 aa)
	Cre-pxf-1	CRE-PXF-1 protein. (1476 aa)
	Cre-gon-1	CRE-GON-1 protein. (2717 aa)
	CRE_31186	Uncharacterized protein. (443 aa)
	Cre-cdh-3	CRE-CDH-3 protein. (3351 aa)
	CRE_19104	Uncharacterized protein. (731 aa)
	Cre-gpn-1	CRE-GPN-1 protein; Belongs to the glypican family. (547 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00095	CRE_07192	E3LD48	E3NVQ7	Uncharacterized protein.	Uncharacterized protein.	0.929
CRE_00095	CRE_07653	E3LD48	E3MP40	Uncharacterized protein.	Uncharacterized protein.	0.871
CRE_00095	CRE_07654	E3LD48	E3MP41	Uncharacterized protein.	Uncharacterized protein.	0.871
CRE_00095	CRE_13469	E3LD48	E3MR61	Uncharacterized protein.	Uncharacterized protein.	0.871
CRE_00095	CRE_21031	E3LD48	E3NND4	Uncharacterized protein.	Uncharacterized protein.	0.929
CRE_00095	CRE_22899	E3LD48	E3MW02	Uncharacterized protein.	Laminin N-terminal domain-containing protein.	0.929
CRE_00095	CRE_30392	E3LD48	E3NAE5	Uncharacterized protein.	Uncharacterized protein.	0.871
CRE_00095	CRE_31186	E3LD48	E3MLH2	Uncharacterized protein.	Uncharacterized protein.	0.446
CRE_00095	Cre-emb-9	E3LD48	E3LSI3	Uncharacterized protein.	CRE-EMB-9 protein.	0.446
CRE_00095	Cre-epi-1	E3LD48	E3M5E7	Uncharacterized protein.	CRE-EPI-1 protein.	0.929
CRE_00095	Cre-lam-1	E3LD48	E3NQJ8	Uncharacterized protein.	CRE-LAM-1 protein.	0.871
CRE_00095	Cre-lam-3	E3LD48	E3LVX7	Uncharacterized protein.	CRE-LAM-3 protein.	0.969
CRE_00095	Cre-nid-1	E3LD48	E3LTX5	Uncharacterized protein.	CRE-NID-1 protein.	0.828
CRE_00095	Cre-pat-3	E3LD48	E3M8G5	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.955
CRE_00574	CRE_03910	E3LD76	E3LXS8	Uncharacterized protein.	Uncharacterized protein.	0.481
CRE_00574	CRE_11006	E3LD76	E3M5Y3	Uncharacterized protein.	Uncharacterized protein.	0.619
CRE_00574	CRE_26954	E3LD76	E3LPG4	Uncharacterized protein.	Uncharacterized protein.	0.439
CRE_00574	Cre-gpn-1	E3LD76	E3MJC2	Uncharacterized protein.	CRE-GPN-1 protein; Belongs to the glypican family.	0.527
CRE_00574	Cre-nid-1	E3LD76	E3LTX5	Uncharacterized protein.	CRE-NID-1 protein.	0.627
CRE_00574	Cre-ost-1	E3LD76	E3NES9	Uncharacterized protein.	CRE-OST-1 protein.	0.467