(13 nodes) Dendrite self-avoidance network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_04008	Uncharacterized protein. (618 aa)
	Cre-rig-6	CRE-RIG-6 protein. (1216 aa)
	Cre-sax-7	CRE-SAX-7 protein. (1340 aa)
	Cre-ncam-1	CRE-NCAM-1 protein. (970 aa)
	Cre-zig-3	CRE-ZIG-3 protein. (247 aa)
	Cre-rig-3	CRE-RIG-3 protein. (488 aa)
	CRE_18890	Ig-like domain-containing protein. (300 aa)
	Cre-zig-1	CRE-ZIG-1 protein. (265 aa)
	CRE_21158	Uncharacterized protein. (533 aa)
	Cre-kpc-1	CRE-KPC-1 protein; Belongs to the peptidase S8 family. (739 aa)
	Cre-zig-7	CRE-ZIG-7 protein. (255 aa)
	CRE_12430	Uncharacterized protein. (256 aa)
	CRE_31657	Bravo_FIGEY domain-containing protein. (154 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_04008	CRE_12430	E3LYC3	E3NRV8	Uncharacterized protein.	Uncharacterized protein.	0.833
CRE_04008	CRE_21158	E3LYC3	E3MF17	Uncharacterized protein.	Uncharacterized protein.	0.974
CRE_04008	CRE_31657	E3LYC3	E3NVJ9	Uncharacterized protein.	Bravo_FIGEY domain-containing protein.	0.833
CRE_04008	Cre-kpc-1	E3LYC3	E3NJS1	Uncharacterized protein.	CRE-KPC-1 protein; Belongs to the peptidase S8 family.	0.853
CRE_04008	Cre-ncam-1	E3LYC3	E3MA82	Uncharacterized protein.	CRE-NCAM-1 protein.	0.443
CRE_04008	Cre-rig-3	E3LYC3	E3LDA1	Uncharacterized protein.	CRE-RIG-3 protein.	0.429
CRE_04008	Cre-rig-6	E3LYC3	E3M476	Uncharacterized protein.	CRE-RIG-6 protein.	0.459
CRE_04008	Cre-sax-7	E3LYC3	E3M6M1	Uncharacterized protein.	CRE-SAX-7 protein.	0.833
CRE_04008	Cre-zig-1	E3LYC3	E3M3C3	Uncharacterized protein.	CRE-ZIG-1 protein.	0.429
CRE_04008	Cre-zig-3	E3LYC3	E3LCB0	Uncharacterized protein.	CRE-ZIG-3 protein.	0.429
CRE_12430	CRE_04008	E3NRV8	E3LYC3	Uncharacterized protein.	Uncharacterized protein.	0.833
CRE_12430	CRE_21158	E3NRV8	E3MF17	Uncharacterized protein.	Uncharacterized protein.	0.900
CRE_12430	Cre-kpc-1	E3NRV8	E3NJS1	Uncharacterized protein.	CRE-KPC-1 protein; Belongs to the peptidase S8 family.	0.426
CRE_12430	Cre-rig-3	E3NRV8	E3LDA1	Uncharacterized protein.	CRE-RIG-3 protein.	0.582
CRE_12430	Cre-rig-6	E3NRV8	E3M476	Uncharacterized protein.	CRE-RIG-6 protein.	0.941
CRE_12430	Cre-zig-1	E3NRV8	E3M3C3	Uncharacterized protein.	CRE-ZIG-1 protein.	0.587
CRE_12430	Cre-zig-3	E3NRV8	E3LCB0	Uncharacterized protein.	CRE-ZIG-3 protein.	0.729
CRE_21158	CRE_04008	E3MF17	E3LYC3	Uncharacterized protein.	Uncharacterized protein.	0.974
CRE_21158	CRE_12430	E3MF17	E3NRV8	Uncharacterized protein.	Uncharacterized protein.	0.900
CRE_21158	CRE_31657	E3MF17	E3NVJ9	Uncharacterized protein.	Bravo_FIGEY domain-containing protein.	0.900